RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 LACTBL1A8MY62 500 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 CDK2AP1O14519 115 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 HNRNPDLO14979 420 aaKnown RBP10.8□□□□□ -0.68
SCFD1-220ENST00000556486 KHNYNO15037 678 aaKnown RBP10.8□□□□□ -0.68
SCFD1-220ENST00000556486 ATG13O75143 517 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 AKAP3O75969 853 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 RHOBTB1O94844 696 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 BMP15O95972 392 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 CYP11A1P05108 521 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 CEACAM1P13688 526 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 MZF1P28698 734 aaPredicted RBP10.8□□□□□ -0.68
SCFD1-220ENST00000556486 TNFSF9P41273 254 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 DHPSP49366 369 aaPredicted RBP10.8□□□□□ -0.68
SCFD1-220ENST00000556486 MCM2P49736 904 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 LIG4P49917 911 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 GALK1P51570 392 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 LILRA4P59901 499 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 GTF2BQ00403 316 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 RUNX3Q13761 415 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 ARHGAP15Q53QZ3 475 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 PPP1R26Q5T8A7 1209 aaPredicted RBP10.8□□□□□ -0.68
SCFD1-220ENST00000556486 MCTP1Q6DN14 999 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 CENPPQ6IPU0 288 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 CCDC116Q8IYX3 515 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 RIN3Q8TB24 985 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 LRRC15Q8TF66 581 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 PIGKQ92643 395 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 EZH1Q92800 747 aaPredicted RBP10.8□□□□□ -0.68
SCFD1-220ENST00000556486 CDK5RAP3Q96JB5 506 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 TMX3Q96JJ7 454 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 SLC46A2Q9BY10 475 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 CCSER1Q9C0I3 900 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 PARVGQ9HBI0 331 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 BLOC1S4Q9NUP1 217 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 CPSF3Q9UKF6 684 aaKnown RBP10.8□□□□□ -0.68
SCFD1-220ENST00000556486 USP3Q9Y6I4 520 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 STYXL1Q9Y6J8 313 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 ASCC3Q8N3C0 2202 aaKnown RBP10.8□□□□□ -0.68
SCFD1-220ENST00000556486 CELSR3Q9NYQ7 3312 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 CCDC163A0A0D9SF12 145 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 PIRO00625 290 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 PPEF2O14830 753 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 FGF19O95750 216 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 ODC1P11926 461 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 LONP1P36776 959 aaKnown RBP10.79□□□□□ -0.68
SCFD1-220ENST00000556486 UBA7P41226 1012 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 DMC1Q14565 340 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 ZRSR1Q15695 479 aaKnown RBP10.79□□□□□ -0.68
SCFD1-220ENST00000556486 SOWAHCQ53LP3 525 aaPredicted RBP10.79□□□□□ -0.68
SCFD1-220ENST00000556486 OVOS1Q6IE37 1185 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 SLC39A4Q6P5W5 647 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 USP37Q86T82 979 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 MAB21L3Q8N8X9 362 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 PSMG2Q969U7 264 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 BICD1Q96G01 975 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 ASB7Q9H672 318 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 TASP1Q9H6P5 420 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 RPF1Q9H9Y2 349 aaKnown RBP10.79□□□□□ -0.68
SCFD1-220ENST00000556486 THG1LQ9NWX6 298 aaKnown RBP10.79□□□□□ -0.68
SCFD1-220ENST00000556486 OBP2AQ9NY56 170 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 ZMYM5Q9UJ78 669 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 C2CD2Q9Y426 696 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 DENND4CQ5VZ89 1909 aa10.79□□□□□ -0.68
SCFD1-220ENST00000556486 NPHP3-ACAD11A0A0J9YXS1 232 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 TRDMT1O14717 391 aaKnown RBP10.78□□□□□ -0.68
SCFD1-220ENST00000556486 APBB3O95704 486 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 IL2RAP01589 272 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 ATF6P18850 670 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 CSRP1P21291 193 aaKnown RBP10.78□□□□□ -0.68
SCFD1-220ENST00000556486 GJB2P29033 226 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 GNA15P30679 374 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 FAM193AP78312 1265 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 SIM1P81133 766 aaPredicted RBP10.78□□□□□ -0.68
SCFD1-220ENST00000556486 DNM1Q05193 864 aaKnown RBP10.78□□□□□ -0.68
SCFD1-220ENST00000556486 SMARCB1Q12824 385 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 SLC39A12Q504Y0 691 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 C9orf57Q5W0N0 161 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 PMS2CLQ68D20 193 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 ANO7Q6IWH7 933 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 DSTYKQ6XUX3 929 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 BRAPQ7Z569 592 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 GPBP1Q86WP2 473 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 CHCHD4Q8N4Q1 142 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 CAMKK1Q8N5S9 505 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 FRMD1Q8N878 549 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 RLN3Q8WXF3 142 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 CALML4Q96GE6 196 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 SENP8Q96LD8 212 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 P2RY13Q9BPV8 354 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 FAM83CQ9BQN1 747 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 CAPN10Q9HC96 672 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 DSEQ9UL01 958 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 PTPRDP23468 1912 aa10.78□□□□□ -0.68
SCFD1-220ENST00000556486 TNRC6BQ9UPQ9 1833 aaKnown RBP10.77□□□□□ -0.68
SCFD1-220ENST00000556486 H3BQV1 296 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 K7ENM7 598 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 CD2BP2O95400 341 aaKnown RBP10.77□□□□□ -0.69
SCFD1-220ENST00000556486 PLCG1P19174 1290 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 MATR3P43243 847 aaKnown RBP eCLIP10.77□□□□□ -0.69
SCFD1-220ENST00000556486 TUFMP49411 452 aaKnown RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms