RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 NOMO3P69849 1222 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 ITIH3Q06033 890 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 PDCLQ13371 301 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 CLUL1Q15846 466 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 RAB41Q5JT25 222 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 NAA35Q5VZE5 725 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 CES5AQ6NT32 575 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 CYP26C1Q6V0L0 522 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 SCAMP5Q8TAC9 235 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 OLIG1Q8TAK6 271 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 HLA-CQ95604 372 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 HSFY1Q96LI6 401 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 MYRFLQ96LU7 910 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 NOX5Q96PH1 765 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 PANX2Q96RD6 677 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 CORO1BQ9BR76 489 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 ST7Q9NRC1 585 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 HCFC1R1Q9NWW0 138 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 COMMD8Q9NX08 183 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 IL37Q9NZH6 218 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 EHD2Q9NZN4 543 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 DNMT3BQ9UBC3 853 aaKnown RBP12.91□□□□□ -0.34
SHMT2-209ENST00000553949 CD207Q9UJ71 328 aa12.91□□□□□ -0.34
SHMT2-209ENST00000553949 MAGED2Q9UNF1 606 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-209ENST00000553949 XIRP2A4UGR9 3374 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 H3BQ06 376 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-209ENST00000553949 GABBR2O75899 941 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 RTN3O95197 1032 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-209ENST00000553949 UNGP13051 313 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-209ENST00000553949 YWHAQP27348 245 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 EIF4A3P38919 411 aaKnown RBP12.9□□□□□ -0.34
SHMT2-209ENST00000553949 RPL34P49207 117 aaKnown RBP12.9□□□□□ -0.34
SHMT2-209ENST00000553949 TKTL1P51854 596 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 CDK17Q00537 523 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 ADIGQ0VDE8 80 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 IFRD2Q12894 506 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-209ENST00000553949 CLEC16AQ2KHT3 1053 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 ATAT1Q5SQI0 421 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 GRASPQ7Z6J2 395 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-209ENST00000553949 VPS36Q86VN1 386 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 TMC8Q8IU68 726 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 HS6ST3Q8IZP7 471 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 LEMD2Q8NC56 503 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 SMRP1Q8NCR6 262 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 CPA5Q8WXQ8 436 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 TRMT2BQ96GJ1 504 aaKnown RBP12.9□□□□□ -0.34
SHMT2-209ENST00000553949 PPP1R13BQ96KQ4 1090 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.9□□□□□ -0.34
SHMT2-209ENST00000553949 TTLL2Q9BWV7 592 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 SLC4A5Q9BY07 1137 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 LRRC3Q9BY71 257 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 FBXO44Q9H4M3 255 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 LRRC4Q9HBW1 653 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 ZNF334Q9HCZ1 680 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-209ENST00000553949 CYLDQ9NQC7 956 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 ASAH2Q9NR71 780 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 CDH22Q9UJ99 828 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 USP3Q9Y6I4 520 aa12.9□□□□□ -0.34
SHMT2-209ENST00000553949 FAM170AA1A519 330 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 FAM92AA1XBS5 289 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 PIK3R2O00459 728 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 DDX3XO00571 662 aaKnown RBP eCLIP12.89□□□□□ -0.351e-14■■□□□ 13.5
SHMT2-209ENST00000553949 RHOP08100 348 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 MYL4P12829 197 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 LCP1P13796 627 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 ACADSBP45954 432 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 EPHA5P54756 1037 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 GSDMDP57764 484 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 NTHL1P78549 312 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 TAF10Q12962 218 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 MAPK8IP2Q13387 824 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-209ENST00000553949 PTPN20Q4JDL3 420 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 PABPC1LQ4VXU2 614 aaKnown RBP12.89□□□□□ -0.35
SHMT2-209ENST00000553949 CYP4A22Q5TCH4 519 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 PDZD4Q76G19 769 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-209ENST00000553949 CCDC186Q7Z3E2 898 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 TMEM110Q86TL2 294 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 SIX6OS1Q8N1H7 587 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 SLC30A5Q8TAD4 765 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 CPXM1Q96SM3 734 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 CHP1Q99653 195 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 SYNCQ9H7C4 482 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 IL21Q9HBE4 155 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 AVENQ9NQS1 362 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-209ENST00000553949 UXTQ9UBK9 157 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-209ENST00000553949 ADAMTS1Q9UHI8 967 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 COG5Q9UP83 839 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 SCML2Q9UQR0 700 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 PTPRDP23468 1912 aa12.89□□□□□ -0.35
SHMT2-209ENST00000553949 SSU72P8A0A1W2PR75 194 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 E5RJQ4 531 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 FGF19O95750 216 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 ERBB2P04626 1255 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 USP17L7P0C7H9 530 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 FECHP22830 423 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 MMP8P22894 467 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 GABRR2P28476 465 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 MTHFRP42898 656 aa12.88□□□□□ -0.35
SHMT2-209ENST00000553949 NSFP46459 744 aaKnown RBP12.88□□□□□ -0.35
SHMT2-209ENST00000553949 SNX16P57768 344 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms