RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 LEFTY2O00292 366 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 MATN3O15232 486 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 HOXC11O43248 304 aaPredicted RBP5.81□□□□□ -1.48
SCFD1-209ENST00000553280 RAD17O75943 681 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 SUN1O94901 812 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 VIPP01282 170 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 SRGAP2BP0DMP2 458 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 ARP10275 920 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 TNFRSF1AP19438 455 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 MSX2P35548 267 aaPredicted RBP5.81□□□□□ -1.48
SCFD1-209ENST00000553280 PAPOLAP51003 745 aaKnown RBP5.81□□□□□ -1.48
SCFD1-209ENST00000553280 MPP1Q00013 466 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 NHLH2Q02577 135 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 TLE2Q04725 743 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 SCAPQ12770 1279 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 FOXD4Q12950 439 aaPredicted RBP5.81□□□□□ -1.48
SCFD1-209ENST00000553280 CUL4BQ13620 913 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 PTCHD3Q3KNS1 767 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 C1QL3Q5VWW1 255 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 ABLIM2Q6H8Q1 611 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 TMEM108Q6UXF1 575 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 RSRC2Q7L4I2 434 aaKnown RBP5.81□□□□□ -1.48
SCFD1-209ENST00000553280 C2CD5Q86YS7 1000 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 CPOQ8IVL8 374 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 PALM2Q8IXS6 379 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 GSPT2Q8IYD1 628 aaKnown RBP5.81□□□□□ -1.48
SCFD1-209ENST00000553280 ANKRD35Q8N283 1001 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 ESX1Q8N693 406 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 MB21D1Q8N884 522 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 Q8NA96 180 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 OR6Y1Q8NGX8 325 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 MAELQ96JY0 434 aaKnown RBP5.81□□□□□ -1.48
SCFD1-209ENST00000553280 ZNF668Q96K58 619 aaPredicted RBP5.81□□□□□ -1.48
SCFD1-209ENST00000553280 TWSG1Q9GZX9 223 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 RNPEPQ9H4A4 650 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 DEF6Q9H4E7 631 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 EPS8L2Q9H6S3 715 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 CXorf36Q9H7Y0 433 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 SEPSECSQ9HD40 501 aaKnown RBP5.81□□□□□ -1.48
SCFD1-209ENST00000553280 VPS45Q9NRW7 570 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 MRPS17Q9Y2R5 130 aaKnown RBP5.81□□□□□ -1.48
SCFD1-209ENST00000553280 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.81□□□□□ -1.48
SCFD1-209ENST00000553280 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.81□□□□□ -1.48
SCFD1-209ENST00000553280 SLC30A1Q9Y6M5 507 aa5.81□□□□□ -1.48
SCFD1-209ENST00000553280 A0A1B0GTW7 788 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 PRKCBP05771 671 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 KCNA2P16389 499 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 ITGALP20701 1170 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 ANXA11P50995 505 aaKnown RBP5.8□□□□□ -1.48
SCFD1-209ENST00000553280 RABGGTBP53611 331 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 PRKAG1P54619 331 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 BCAT1P54687 386 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 TRIM60Q495X7 471 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 HTR3DQ70Z44 454 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 SPRED1Q7Z699 444 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 SPARTQ8N0X7 666 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 OR56A1Q8NGH5 318 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 SH3RF3Q8TEJ3 882 aaPredicted RBP5.8□□□□□ -1.48
SCFD1-209ENST00000553280 ABHD5Q8WTS1 349 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 SLC26A6Q9BXS9 759 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 KLC2Q9H0B6 622 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 TAF1DQ9H5J8 278 aaPredicted RBP5.8□□□□□ -1.48
SCFD1-209ENST00000553280 CD248Q9HCU0 757 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 DNAJB11Q9UBS4 358 aa5.8□□□□□ -1.48
SCFD1-209ENST00000553280 NDRG4Q9ULP0 352 aaKnown RBP5.8□□□□□ -1.48
SCFD1-209ENST00000553280 CCDC78A2IDD5 438 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 DIRC3C9JPN6 131 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 CD3EAPO15446 510 aaKnown RBP5.79□□□□□ -1.48
SCFD1-209ENST00000553280 DHHO43323 396 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 SRGAP2O75044 1071 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 MBD4O95243 580 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 HLA-DOAP06340 250 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 XBP1P17861 261 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 FGFR4P22455 802 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 PPIFP30405 207 aaKnown RBP5.79□□□□□ -1.48
SCFD1-209ENST00000553280 RXRGP48443 463 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 AARSP49588 968 aaKnown RBP eCLIP5.79□□□□□ -1.48
SCFD1-209ENST00000553280 ACTR2P61160 394 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 GPS1Q13098 491 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 DYRK1AQ13627 763 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 E2F2Q14209 437 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 CDSNQ15517 529 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 SFRP4Q6FHJ7 346 aaPredicted RBP5.79□□□□□ -1.48
SCFD1-209ENST00000553280 TCTN3Q6NUS6 607 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 FOXR2Q6PJQ5 311 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.79□□□□□ -1.48
SCFD1-209ENST00000553280 FUKQ8N0W3 1084 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.79□□□□□ -1.48
SCFD1-209ENST00000553280 DNAJB14Q8TBM8 379 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 AFG1LQ8WV93 481 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 GRAMD1AQ96CP6 724 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 TRAPPC9Q96Q05 1148 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 MNTQ99583 582 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 NUDT22Q9BRQ3 303 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 GBA2Q9HCG7 927 aaPredicted RBP5.79□□□□□ -1.48
SCFD1-209ENST00000553280 UBN1Q9NPG3 1134 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 RASSF1Q9NS23 344 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 VPS51Q9UID3 782 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 DAPP1Q9UN19 280 aa5.79□□□□□ -1.48
SCFD1-209ENST00000553280 USP15Q9Y4E8 981 aaPredicted RBP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms