RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 SRGAP2O75044 1071 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 RFPL1O75677 317 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 RASSF9O75901 435 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 SCGB1D2O95969 90 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 BRAFP15056 766 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 ZKSCAN1P17029 563 aaPredicted RBP4.82□□□□□ -1.64
PRKDC-210ENST00000541488 CERS1P27544 350 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 RENBPP51606 427 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 AGFG1P52594 562 aaKnown RBP4.82□□□□□ -1.64
PRKDC-210ENST00000541488 WNT3P56703 355 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 CNN3Q15417 329 aaKnown RBP4.82□□□□□ -1.64
PRKDC-210ENST00000541488 TBC1D25Q3MII6 688 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 RNASE12Q5GAN4 147 aaKnown RBP4.82□□□□□ -1.64
PRKDC-210ENST00000541488 C3orf38Q5JPI3 329 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 MIS18BP1Q6P0N0 1132 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 CATSPERGQ6ZRH7 1159 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 C1QL2Q7Z5L3 287 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 GAS2L3Q86XJ1 694 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 SPARTQ8N0X7 666 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 ZBTB45Q96K62 511 aaPredicted RBP4.82□□□□□ -1.64
PRKDC-210ENST00000541488 MMS19Q96T76 1030 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 C22orf23Q9BZE7 217 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 STK32BQ9NY57 414 aa4.82□□□□□ -1.64
PRKDC-210ENST00000541488 SMIM35A0A1B0GVV1 85 aa4.81□□□□□ -1.64
PRKDC-210ENST00000541488 TUBB4AP04350 444 aa4.81□□□□□ -1.64
PRKDC-210ENST00000541488 DLDP09622 509 aaKnown RBP4.81□□□□□ -1.64
PRKDC-210ENST00000541488 SFPQP23246 707 aaKnown RBP eCLIP4.81□□□□□ -1.64
PRKDC-210ENST00000541488 PSG6Q00889 435 aa4.81□□□□□ -1.64
PRKDC-210ENST00000541488 ARHGAP29Q52LW3 1261 aa4.81□□□□□ -1.64
PRKDC-210ENST00000541488 AWAT1Q58HT5 328 aa4.81□□□□□ -1.64
PRKDC-210ENST00000541488 CHPFQ8IZ52 775 aa4.81□□□□□ -1.64
PRKDC-210ENST00000541488 RPL36ALQ969Q0 106 aaKnown RBP4.81□□□□□ -1.64
PRKDC-210ENST00000541488 SPRTNQ9H040 489 aaPredicted RBP4.81□□□□□ -1.64
PRKDC-210ENST00000541488 BHMT2Q9H2M3 363 aa4.81□□□□□ -1.64
PRKDC-210ENST00000541488 A6NNZ2 444 aa4.8□□□□□ -1.64
PRKDC-210ENST00000541488 HOXB6P17509 224 aaKnown RBP4.8□□□□□ -1.64
PRKDC-210ENST00000541488 EN2P19622 333 aaPredicted RBP4.8□□□□□ -1.64
PRKDC-210ENST00000541488 YY1P25490 414 aa4.8□□□□□ -1.64
PRKDC-210ENST00000541488 SSBP2P81877 361 aaPredicted RBP4.8□□□□□ -1.64
PRKDC-210ENST00000541488 PPP2R5AQ15172 486 aa4.8□□□□□ -1.64
PRKDC-210ENST00000541488 PLEKHG6Q3KR16 790 aa4.8□□□□□ -1.64
PRKDC-210ENST00000541488 APOA5Q6Q788 366 aa4.8□□□□□ -1.64
PRKDC-210ENST00000541488 SIRT6Q8N6T7 355 aa4.8□□□□□ -1.64
PRKDC-210ENST00000541488 RUNDC1Q96C34 613 aa4.8□□□□□ -1.64
PRKDC-210ENST00000541488 DPH1Q9BZG8 443 aa4.8□□□□□ -1.64
PRKDC-210ENST00000541488 DDX20Q9UHI6 824 aaKnown RBP4.8□□□□□ -1.64
PRKDC-210ENST00000541488 HDAC9Q9UKV0 1011 aa4.8□□□□□ -1.64
PRKDC-210ENST00000541488 G3BP2Q9UN86 482 aaKnown RBP4.8□□□□□ -1.64
PRKDC-210ENST00000541488 GABRQQ9UN88 632 aa4.8□□□□□ -1.64
PRKDC-210ENST00000541488 DRG1Q9Y295 367 aaKnown RBP4.8□□□□□ -1.64
PRKDC-210ENST00000541488 ZNF521Q96K83 1311 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 PYCARD-AS1I3L0S3 204 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 PSMD9O00233 223 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 MARCH6O60337 910 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 GCATO75600 419 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 CYP2A6P11509 494 aaPredicted RBP4.79□□□□□ -1.64
PRKDC-210ENST00000541488 HGFP14210 728 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 PRKAR1BP31321 381 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 COPB1P53618 953 aaKnown RBP4.79□□□□□ -1.64
PRKDC-210ENST00000541488 STK3Q13188 491 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 CCNIQ14094 377 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 CERKLQ49MI3 558 aaPredicted RBP4.79□□□□□ -1.64
PRKDC-210ENST00000541488 CERCAMQ5T4B2 595 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 MORN5Q5VZ52 161 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 PPP4R4Q6NUP7 873 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 C8orf58Q8NAV2 365 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 DENND1AQ8TEH3 1009 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 SPSB4Q96A44 273 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 PPP1R9BQ96SB3 815 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 THAP7Q9BT49 309 aaPredicted RBP4.79□□□□□ -1.64
PRKDC-210ENST00000541488 EFHD1Q9BUP0 239 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 SEMA4CQ9C0C4 833 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 ZNF518BQ9C0D4 1074 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 TFCP2L1Q9NZI6 479 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 AMFRQ9UKV5 643 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 USP22Q9UPT9 525 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 BTBD3Q9Y2F9 522 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 CDY1Q9Y6F8 540 aa4.79□□□□□ -1.64
PRKDC-210ENST00000541488 FER1L4A9Z1Z3 1794 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 WDR17Q8IZU2 1322 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 FAM227AF5H4B4 570 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 POC1B-GALNT4F8VUJ3 575 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 MYO1FO00160 1098 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 RAB27BO00194 218 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 PMPCBO75439 489 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 MAP4K4O95819 1239 aaPredicted RBP4.78□□□□□ -1.64
PRKDC-210ENST00000541488 FGAP02671 866 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 S100BP04271 92 aaPredicted RBP4.78□□□□□ -1.64
PRKDC-210ENST00000541488 PRKCBP05771 671 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 GKP32189 559 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 MMP13P45452 471 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 PTDSS1P48651 473 aaKnown RBP4.78□□□□□ -1.64
PRKDC-210ENST00000541488 MTHFSP49914 203 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 SUMO2P61956 95 aaKnown RBP4.78□□□□□ -1.64
PRKDC-210ENST00000541488 RPS16P62249 146 aaKnown RBP4.78□□□□□ -1.64
PRKDC-210ENST00000541488 RABEP1Q15276 862 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 FAM187BQ17R55 369 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 MINDY4Q4G0A6 757 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 Q4G0T1 1027 aa4.78□□□□□ -1.64
PRKDC-210ENST00000541488 C11orf87Q6NUJ2 197 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms