RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 SLC38A7Q9NVC3 462 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.25□□□□□ -0.61
CLIP1-213ENST00000540338 STK38LQ9Y2H1 464 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 O00370 1275 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 SPAG6O75602 509 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 RECQL4O94761 1208 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 ERBB2P04626 1255 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 RGS2P41220 211 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 MMP13P45452 471 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 SLC6A3Q01959 620 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 BST2Q10589 180 aaKnown RBP11.25□□□□□ -0.61
CLIP1-213ENST00000540338 GNASQ5JWF2 1037 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 MFSD14CQ5VZR4 134 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 XYLT1Q86Y38 959 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 ZDHHC17Q8IUH5 632 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 TRIM42Q8IWZ5 723 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 FBXO36Q8NEA4 188 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 GIMAP7Q8NHV1 300 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 CCDC110Q8TBZ0 833 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 ALKBH8Q96BT7 664 aaKnown RBP11.25□□□□□ -0.61
CLIP1-213ENST00000540338 TLCD1Q96CP7 247 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 THOC1Q96FV9 657 aaKnown RBP11.25□□□□□ -0.61
CLIP1-213ENST00000540338 NFKBIZQ9BYH8 718 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 SLC24A2Q9UI40 661 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 CNTN6Q9UQ52 1028 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 TTLL3Q9Y4R7 772 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 HES2Q9Y543 173 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 ARHGEF37A1IGU5 675 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 COPEO14579 308 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 TSPAN1O60635 241 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 LRCH4O75427 683 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 TRUB2O95900 331 aaKnown RBP11.24□□□□□ -0.61
CLIP1-213ENST00000540338 MMP3P08254 477 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 GTF2A1P52655 376 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-213ENST00000540338 PDE1BQ01064 536 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 PRAMEF19Q5SWL8 479 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 C4orf22Q6V702 233 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 UNC93AQ86WB7 457 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLIP1-213ENST00000540338 CNMDO75829 334 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 SMIM10L2AP0DMW4 78 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 SMIM10L2BP0DMW5 78 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 PCK1P35558 622 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 CDKN2BP42772 138 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 PSEN2P49810 448 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 FKBP1BP68106 108 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 ZNF200P98182 395 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-213ENST00000540338 PCBP1Q15365 356 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLIP1-213ENST00000540338 SNCBQ16143 134 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 FAM187BQ17R55 369 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 DCAF6Q58WW2 860 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 EXOC3L1Q86VI1 746 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 PAF1Q8N7H5 531 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 C10orf88Q9H8K7 445 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 CTNNAL1Q9UBT7 734 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 ZC3H7BQ9UGR2 993 aaKnown RBP11.24□□□□□ -0.61
CLIP1-213ENST00000540338 ARFGEF1Q9Y6D6 1849 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 KPNA7A9QM74 516 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 CTSHP09668 335 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 ZNF132P52740 706 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 FAM110CQ1W6H9 321 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 C15orf59Q2T9L4 293 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-213ENST00000540338 MFSD5Q6N075 450 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 LCLAT1Q6UWP7 414 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 FAM183BPQ6ZVS7 135 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 DEPDC1BQ8WUY9 529 aa11.24□□□□□ -0.61
CLIP1-213ENST00000540338 NKD2Q969F2 451 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-213ENST00000540338 GRIN2DO15399 1336 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 SIPA1L1O43166 1804 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 LPXNO60711 386 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 MXRA7P84157 204 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 PPP2R5DQ14738 602 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 TRPM8Q7Z2W7 1104 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 ADGRF2Q8IZF7 708 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 C12orf29Q8N999 325 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 DNAAF3Q8N9W5 541 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 TTC17Q96AE7 1141 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 MAML3Q96JK9 1138 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 RAB3IPQ96QF0 476 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-213ENST00000540338 ZFYVE28Q9HCC9 887 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 A0A1B0GUA9 196 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 GOLGA8RI6L899 631 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 MAP3K6O95382 1288 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 ABHD2P08910 425 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 SMPD1P17405 629 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 AP1B1Q10567 949 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 C6orf163Q5TEZ5 329 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 DRICH1Q6PGQ1 229 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-213ENST00000540338 ILDR2Q71H61 639 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 TBC1D1Q86TI0 1168 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-213ENST00000540338 LRRC52Q8N7C0 313 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 KLHL8Q9P2G9 620 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-213ENST00000540338 GGA2Q9UJY4 613 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 DERAQ9Y315 318 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 DNAJC25-GNG10A0A024R161 153 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 ITIH4Q14624 930 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 NIPA2Q8N8Q9 360 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 PPP1R13LQ8WUF5 828 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 TXLNGQ9NUQ3 528 aa11.23□□□□□ -0.61
CLIP1-213ENST00000540338 RNF19AQ9NV58 838 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms