RNA–Protein interactions for RNA: ENST00000527158.2

SNRNP35-204, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 35, humanhuman

TSL 1 (best)

Gene SNRNP35, Length 2,161 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP35-204ENST00000527158 ZIM3Q96PE6 472 aa17.01■□□□□ 0.31
SNRNP35-204ENST00000527158 HNRNPABQ99729 332 aaKnown RBP17.01■□□□□ 0.31
SNRNP35-204ENST00000527158 DDX43Q9NXZ2 648 aaKnown RBP17.01■□□□□ 0.31
SNRNP35-204ENST00000527158 HMGB1P1B2RPK0 211 aaPredicted RBP17■□□□□ 0.31
SNRNP35-204ENST00000527158 GRAP2O75791 330 aa17■□□□□ 0.31
SNRNP35-204ENST00000527158 HSPA9P38646 679 aaKnown RBP17■□□□□ 0.31
SNRNP35-204ENST00000527158 GNGT1P63211 74 aa17■□□□□ 0.31
SNRNP35-204ENST00000527158 FOXR1Q6PIV2 292 aa17■□□□□ 0.31
SNRNP35-204ENST00000527158 ATG4AQ8WYN0 398 aa17■□□□□ 0.31
SNRNP35-204ENST00000527158 HSFY1Q96LI6 401 aa17■□□□□ 0.31
SNRNP35-204ENST00000527158 SEZ6LQ9BYH1 1024 aa17■□□□□ 0.31
SNRNP35-204ENST00000527158 XRN2Q9H0D6 950 aaKnown RBP eCLIP17■□□□□ 0.31
SNRNP35-204ENST00000527158 RGS18Q9NS28 235 aa17■□□□□ 0.31
SNRNP35-204ENST00000527158 PCSK1NQ9UHG2 260 aa17■□□□□ 0.31
SNRNP35-204ENST00000527158 INPP5FQ9Y2H2 1132 aa17■□□□□ 0.31
SNRNP35-204ENST00000527158 SNX24Q9Y343 169 aa17■□□□□ 0.31
SNRNP35-204ENST00000527158 PAPSS1O43252 624 aaPredicted RBP16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 GAS8O95995 478 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 KRT10P13645 584 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 ACAT1P24752 427 aaKnown RBP16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 MIPP30301 263 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 KCTD19Q17RG1 926 aaPredicted RBP16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 SMTNL2Q2TAL5 461 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 ANKS1BQ7Z6G8 1248 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 ARFGAP2Q8N6H7 521 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 ACSF2Q96CM8 615 aaPredicted RBP16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 PIWIL1Q96J94 861 aaKnown RBP16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 NEUROG2Q9H2A3 272 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 USP18Q9UMW8 372 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 R3HDM2Q9Y2K5 976 aaKnown RBP16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 GOLGA6L10A6NI86 522 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 XPO1O14980 1071 aaKnown RBP16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 ATP2C2O75185 946 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 CPP00450 1065 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 PAX3P23760 479 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 IGFBP6P24592 240 aaPredicted RBP16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 IL1R2P27930 398 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 SDC4P31431 198 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 FLT3P36888 993 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 CDKN2BP42772 138 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 RPL34P49207 117 aaKnown RBP16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 TUSC3Q13454 348 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 TTMPQ5BVD1 217 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 KCNT1Q5JUK3 1230 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 KCTD6Q8NC69 237 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 C3orf58Q8NDZ4 430 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 BCAS4Q8TDM0 211 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 CCDC114Q96M63 670 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 UROC1Q96N76 676 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 FMO2Q99518 471 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 DUSP16Q9BY84 665 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 EFR3BQ9Y2G0 817 aa16.99■□□□□ 0.31
SNRNP35-204ENST00000527158 hCG_1818297A0A087WSY0 165 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 DPYSL4O14531 572 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 TRIM66O15016 1216 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 B3GAT3O94766 335 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 TRUB2O95900 331 aaKnown RBP16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 EOMESO95936 686 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 LCP1P13796 627 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 SCNN1AP37088 669 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 LMNB2Q03252 620 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 KRT17Q04695 432 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 TRAF7Q6Q0C0 670 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 SLC24A5Q71RS6 500 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 ZNF598Q86UK7 904 aaKnown RBP16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 FUKQ8N0W3 1084 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 SH3TC2Q8TF17 1288 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 ZBTB9Q96C00 473 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 NCAPGQ9BPX3 1015 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 MED10Q9BTT4 135 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 B3GNT5Q9BYG0 378 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 GABBR2O75899 941 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 ODC1P11926 461 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 KDELR1P24390 212 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 TKTP29401 623 aaKnown RBP16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 PLTPP55058 493 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 MTMR3Q13615 1198 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 TAF5Q15542 800 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 CCDC14Q49A88 953 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 MDH1BQ5I0G3 518 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 METTL23Q86XA0 190 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 PAAF1Q9BRP4 392 aa16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 TIMM13Q9Y5L4 95 aaPredicted RBP16.98■□□□□ 0.31
SNRNP35-204ENST00000527158 PRPSAP2O60256 369 aa16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 NPR3P17342 541 aa16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 YY1P25490 414 aa16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 RPL21P46778 160 aaKnown RBP16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 PLCB3Q01970 1234 aa16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 CALCOCO2Q13137 446 aa16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 CDO1Q16878 200 aa16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 C15orf59Q2T9L4 293 aaPredicted RBP16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 TIGD5Q53EQ6 642 aa16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 TRNP1Q6NT89 227 aa16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 GLB1LQ6UWU2 654 aa16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 MICALCLQ6ZW33 695 aa16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 SLC26A9Q7LBE3 791 aa16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 CMASQ8NFW8 434 aaPredicted RBP16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 HSPH1Q92598 858 aa16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 KHSRPQ92945 711 aaKnown RBP eCLIP16.97■□□□□ 0.31
SNRNP35-204ENST00000527158 CFAP57Q96MR6 1250 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms