RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 PLXDC1Q8IUK5 500 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 UNC45BQ8IWX7 931 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 UNC5BQ8IZJ1 945 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 CNTROBQ8N137 903 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 PIK3C3Q8NEB9 887 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 SCFD2Q8WU76 684 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 HMGB4Q8WW32 186 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 DDX17Q92841 729 aaKnown RBP5.92□□□□□ -1.46
USP47-204ENST00000525078 KIF1BPQ96EK5 621 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 FNBP1Q96RU3 617 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 LBHD1Q9BQE6 289 aaPredicted RBP5.92□□□□□ -1.46
USP47-204ENST00000525078 C2orf40Q9H1Z8 148 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 UNKLQ9H9P5 680 aaKnown RBP5.92□□□□□ -1.46
USP47-204ENST00000525078 RLIMQ9NVW2 624 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 TAB2Q9NYJ8 693 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 MOCS1Q9NZB8 636 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 WDR35Q9P2L0 1181 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 EBF1Q9UH73 591 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 CORO1CQ9ULV4 474 aaPredicted RBP5.92□□□□□ -1.46
USP47-204ENST00000525078 PLAGL2Q9UPG8 496 aa5.92□□□□□ -1.46
USP47-204ENST00000525078 PRSS29PA6NIE9 313 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 AQP7P3A6NL99 342 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 F8W031 263 aaPredicted RBP5.91□□□□□ -1.46
USP47-204ENST00000525078 GNB5O14775 395 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 PSMA7O14818 248 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 KIAA0391O15091 583 aaKnown RBP5.91□□□□□ -1.46
USP47-204ENST00000525078 ZSCAN9O15535 394 aaPredicted RBP5.91□□□□□ -1.46
USP47-204ENST00000525078 SLC7A4O43246 635 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 B3GALNT1O75752 331 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 GOSR1O95249 250 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 ZBTB7AO95365 584 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 GASTP01350 101 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 TUBB4AP04350 444 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 QDPRP09417 244 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 XRCC6P12956 609 aaKnown RBP eCLIP5.91□□□□□ -1.46
USP47-204ENST00000525078 ATF7P17544 494 aaPredicted RBP5.91□□□□□ -1.46
USP47-204ENST00000525078 DESP17661 470 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 EPHA8P29322 1005 aaPredicted RBP5.91□□□□□ -1.46
USP47-204ENST00000525078 PPARGP37231 505 aaPredicted RBP5.91□□□□□ -1.46
USP47-204ENST00000525078 ALDH1A3P47895 512 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 GLRBP48167 497 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 ZNF135P52742 658 aaPredicted RBP5.91□□□□□ -1.46
USP47-204ENST00000525078 WNT3AP56704 352 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 RBP5P82980 135 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 AP1B1Q10567 949 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 GPS1Q13098 491 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 ADAM15Q13444 863 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 PUM1Q14671 1186 aaKnown RBP eCLIP5.91□□□□□ -1.46
USP47-204ENST00000525078 NFIXQ14938 502 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 CACHD1Q5VU97 1274 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 KANK2Q63ZY3 851 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 OTOP2Q7RTS6 562 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 USP37Q86T82 979 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 THNSL1Q8IYQ7 743 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 ULK2Q8IYT8 1036 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 SHISA5Q8N114 240 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 NAT8LQ8N9F0 302 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 TRIML1Q8N9V2 468 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 IL17RDQ8NFM7 739 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 SLC22A17Q8WUG5 538 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 ZNF653Q96CK0 615 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 MFSD14AQ96MC6 490 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 CCDC43Q96MW1 224 aaKnown RBP5.91□□□□□ -1.46
USP47-204ENST00000525078 MED15Q96RN5 788 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 HGH1Q9BTY7 390 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 SLC25A32Q9H2D1 315 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 RANBP17Q9H2T7 1088 aaKnown RBP5.91□□□□□ -1.46
USP47-204ENST00000525078 MUC13Q9H3R2 512 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 RMI1Q9H9A7 625 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 ERVMER34-1Q9H9K5 563 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 PDE7BQ9NP56 450 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 LMCD1Q9NZU5 365 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 EIF2B4Q9UI10 523 aaKnown RBP5.91□□□□□ -1.46
USP47-204ENST00000525078 BAG5Q9UL15 447 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 CAPN11Q9UMQ6 739 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 CNTN6Q9UQ52 1028 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 HPSEQ9Y251 543 aa5.91□□□□□ -1.46
USP47-204ENST00000525078 TMEM265A0A087WTH1 108 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 FAM90A18PA6NE21 464 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 FAM90A16PA6NEW6 464 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 SAC3D1A6NKF1 404 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 FAM90A9PA6NNJ1 464 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 FAM90A5PA8MXJ8 464 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 C9orf172C9J069 976 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 TAF4O00268 1085 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 SEPT4O43236 478 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 CCP110O43303 1012 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 PIAS2O75928 621 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 PLATP00750 562 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 FAM90A15PP0C7V4 464 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 FAM90A14PP0C7W9 464 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 PSMB10P40306 273 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 MAGEA10P43363 369 aaPredicted RBP5.9□□□□□ -1.46
USP47-204ENST00000525078 CLCN2P51788 898 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 ATP1A4Q13733 1029 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 WDR72Q3MJ13 1102 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 TRIM60Q495X7 471 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 PLA1AQ53H76 456 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 ZNF484Q5JVG2 852 aa5.9□□□□□ -1.46
USP47-204ENST00000525078 LIPMQ5VYY2 423 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms