RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 NUDT7P0C024 238 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 CKBP12277 381 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PROZP22891 400 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TIE1P35590 1138 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 MAPK12P53778 367 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 CCT2P78371 535 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 ATP2C1P98194 919 aaPredicted RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 LRRC74AQ0VAA2 488 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PDIA2Q13087 525 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 CDH18Q13634 790 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ATP1A4Q13733 1029 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ZMYND11Q15326 602 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 DLG2Q15700 870 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PCK2Q16822 640 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ZNF827Q17R98 1081 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 BRMS1LQ5PSV4 323 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 STRIP1Q5VSL9 837 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PYHIN1Q6K0P9 492 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ESRP1Q6NXG1 681 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 LRRC31Q6UY01 552 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ERO1BQ86YB8 467 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 STARD8Q92502 1023 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 LARP4BQ92615 738 aaKnown RBP3.7□□□□□ -1.82
USP53-205ENST00000509769 MKL1Q969V6 931 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 CREB3L1Q96BA8 519 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 TBATAQ96M53 351 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 APOL5Q9BWW9 433 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 C17orf75Q9HAS0 396 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ZNF224Q9NZL3 707 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 AASSQ9UDR5 926 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 SLC12A6Q9UHW9 1150 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 RCOR1Q9UKL0 485 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 CDYLQ9Y232 598 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 BCS1LQ9Y276 419 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 SUGT1Q9Y2Z0 365 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ZNF451Q9Y4E5 1061 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PPME1Q9Y570 386 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 PIK3C2GO75747 1445 aa3.7□□□□□ -1.82
USP53-205ENST00000509769 ISPDA4D126 451 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SRGAP2O75044 1071 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CCNKO75909 580 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ATE1O95260 518 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 HMGN1P05114 100 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 FCER2P06734 321 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 LDHBP07195 334 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 FASP25445 335 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 TNFRSF8P28908 595 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 S100GP29377 79 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 AP2S1P53680 142 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 PPIL2Q13356 520 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ITGA7Q13683 1181 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 GPR158Q5T848 1215 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CREB3L3Q68CJ9 461 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ANKS6Q68DC2 871 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 TTC23LQ6PF05 361 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 BNC2Q6ZN30 1099 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 DEF8Q6ZN54 512 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 MIGA2Q7L4E1 593 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CCDC60Q8IWA6 550 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 C12orf56Q8IXR9 622 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 DEPDC4Q8N2C3 294 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ZNF786Q8N393 782 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 DNAAF3Q8N9W5 541 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 BBS1Q8NFJ9 593 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 GANCQ8TET4 914 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 FCGR1BQ92637 280 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 RNFT2Q96EX2 444 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ISCUQ9H1K1 167 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CABP5Q9NP86 173 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CD93Q9NPY3 652 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 PIM2Q9P1W9 311 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 NUP50Q9UKX7 468 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SLC8A2Q9UPR5 921 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ZNF330Q9Y3S2 320 aaPredicted RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 PCDHA13Q9Y5I0 950 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ACTL7BQ9Y614 415 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 PCDH11XQ9BZA7 1347 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 C1orf232A0A0U1RR37 186 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 A6NJR5 290 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CLCA1A8K7I4 914 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 MCIDASD6RGH6 385 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 INO80B-WBP1J3KQ70 363 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ADAM10O14672 748 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 YKT6O15498 198 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 BUB1O43683 1085 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 ORC5O43913 435 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 PMPCBO75439 489 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 AFPP02771 609 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 TSHRP16473 764 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CHMLP26374 656 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 RRM2P31350 389 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 TMPOP42166 694 aaKnown RBP3.69□□□□□ -1.82
USP53-205ENST00000509769 NPTX2P47972 431 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 NLRP6P59044 892 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CENPCQ03188 943 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 CHRNB3Q05901 458 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 SPOCK1Q08629 439 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 HERC3Q15034 1050 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 UBE3CQ15386 1083 aa3.69□□□□□ -1.82
USP53-205ENST00000509769 DDR2Q16832 855 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms