RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 ZMPSTE24O75844 475 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 GCNT1Q02742 428 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 DRICH1Q6PGQ1 229 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 HPS6Q86YV9 775 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 CERS5Q8N5B7 392 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 CNBD2Q96M20 576 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 PCDHGB4Q9UN71 923 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 POLIQ9UNA4 740 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 LZTS1Q9Y250 596 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 PCDHGB5Q9Y5G0 923 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 DDTLA6NHG4 134 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 TRPA1O75762 1119 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 TOP3BO95985 862 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 CCNIQ14094 377 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 TMEM259Q4ZIN3 620 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 MAP3K21Q5TCX8 1036 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 KLC3Q6P597 504 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 AAGABQ6PD74 315 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 UNC45BQ8IWX7 931 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 MMP19Q99542 508 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 USP29Q9HBJ7 922 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 TBX20Q9UMR3 447 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 INPP5FQ9Y2H2 1132 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 PCDHAC2Q9Y5I4 1007 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 SMCHD1A6NHR9 2005 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 HNRNPDLO14979 420 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 MAGEA8P43361 318 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 PLEKHA7Q6IQ23 1121 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 SLC44A1Q8WWI5 657 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 NKD2Q969F2 451 aaPredicted RBP19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 HOMER2Q9NSB8 354 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 ZDHHC7Q9NXF8 308 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 TMOD2Q9NZR1 351 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 FETUBQ9UGM5 382 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 ZNRF3Q9ULT6 936 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 DTNAQ9Y4J8 743 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 COQ9O75208 318 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 ECE1P42892 770 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 RPL5P46777 297 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 NCKAP1LP55160 1127 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 SLC18A2Q05940 514 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 CYP24A1Q07973 514 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 ZNF394Q53GI3 561 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 UGT2A3Q6UWM9 527 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 KYAT3Q6YP21 454 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 USP37Q86T82 979 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 NDUFA13Q9P0J0 144 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 EXOC7Q9UPT5 735 aa19.55■□□□□ 0.72
CCDC88B-207ENST00000479965 CPOXP36551 454 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 GRM2Q14416 872 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 TLR1Q15399 786 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 DOK7Q18PE1 504 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 XKR9Q5GH70 373 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 FAM91A1Q658Y4 838 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 DEFB107AQ8IZN7 70 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 ABRAQ8N0Z2 381 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 ARHGEF1Q92888 912 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 PRICKLE1Q96MT3 831 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 CATSPER2Q96P56 530 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 TTC36A6NLP5 189 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 PMM2O15305 246 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 ATP9BO43861 1147 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 LYPLA1O75608 230 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 TFAP2AP05549 437 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 P4HBP07237 508 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 SERPINA6P08185 405 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 CDKN2BP42772 138 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 COPAP53621 1224 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 CYLC2Q14093 348 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 DNAJC24Q6P3W2 148 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 PTF1AQ7RTS3 328 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 TMC7Q7Z402 723 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 C7orf26Q96N11 449 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 PRPF18Q99633 342 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 ZNF510Q9Y2H8 683 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 HBS1LQ9Y450 684 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 ADCY3O60266 1144 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 YWHABP31946 246 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 OGDHQ02218 1023 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 AOC3Q16853 763 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 ENOSF1Q7L5Y1 443 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 ZNF677Q86XU0 584 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 ZFP28Q8NHY6 868 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 BLOC1S6Q9UL45 172 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 PLLPQ9Y342 182 aa19.54■□□□□ 0.72
CCDC88B-207ENST00000479965 KRT37O76014 449 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 SMIM18P0DKX4 95 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 NCF2P19878 526 aaPredicted RBP19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 ZNF252P-AS1Q0IIN9 211 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 STX3Q13277 289 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 CNGA3Q16281 694 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 TCEAL9Q9UHQ7 104 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 TDRKHQ9Y2W6 561 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 ZNF711Q9Y462 761 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 MAD1L1Q9Y6D9 718 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 UGT1A9O60656 530 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 GH2P01242 217 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 HLA-DRAP01903 254 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 ABCB5Q2M3G0 1257 aa19.53■□□□□ 0.72
CCDC88B-207ENST00000479965 TRIM42Q8IWZ5 723 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms