RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 TRIM7Q9C029 511 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 CWH43Q9H720 699 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 RC3H2Q9HBD1 1191 aaKnown RBP13.47□□□□□ -0.25
VPS13D-205ENST00000473099 CNGB3Q9NQW8 809 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 GBF1Q92538 1859 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 PLXNA4Q9HCM2 1894 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 GOLGA6L10A0A0M3HER8 536 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 F8W810 466 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 HSF2BPO75031 334 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 LCP1P13796 627 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 PDGFRAP16234 1089 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 SDC4P31431 198 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 PCK1P35558 622 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 PPM1AP35813 382 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 PTPN9P43378 593 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 MAP3K7CLP57077 242 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 COPS2P61201 443 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 DEFB103AP81534 67 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 ZNF252P-AS1Q0IIN9 211 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 ADIGQ0VDE8 80 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 BTG3Q14201 252 aaPredicted RBP13.46□□□□□ -0.25
VPS13D-205ENST00000473099 PTPROQ16827 1216 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 USP41Q3LFD5 358 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 ODF2Q5BJF6 829 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 RAB41Q5JT25 222 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 SPOUT1Q5T280 376 aaKnown RBP13.46□□□□□ -0.25
VPS13D-205ENST00000473099 SCUBE3Q8IX30 993 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 MMGT1Q8N4V1 131 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 GPR161Q8N6U8 529 aaKnown RBP13.46□□□□□ -0.25
VPS13D-205ENST00000473099 SPATA4Q8NEY3 305 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 EXD1Q8NHP7 514 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 JOSD2Q8TAC2 188 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 IRGQQ8WZA9 623 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 ALG3Q92685 438 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 KRT35Q92764 455 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 IGSF21Q96ID5 467 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 SMOQ99835 787 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 TTPALQ9BTX7 342 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 GPR62Q9BZJ7 368 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 MTIF3Q9H2K0 278 aaKnown RBP13.46□□□□□ -0.25
VPS13D-205ENST00000473099 AAASQ9NRG9 546 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 USTQ9Y2C2 406 aa13.46□□□□□ -0.25
VPS13D-205ENST00000473099 COL4A4P53420 1690 aaPredicted RBP13.45□□□□□ -0.26
VPS13D-205ENST00000473099 PDE2AO00408 941 aaPredicted RBP13.45□□□□□ -0.26
VPS13D-205ENST00000473099 TRIM66O15016 1216 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 DAB1O75553 588 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 ZRANB2O95218 330 aaKnown RBP eCLIP13.45□□□□□ -0.26
VPS13D-205ENST00000473099 GJB6O95452 261 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 SSR1P43307 286 aaKnown RBP13.45□□□□□ -0.26
VPS13D-205ENST00000473099 MAGEA11P43364 429 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 TKTL1P51854 596 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 MRPS5P82675 430 aaKnown RBP13.45□□□□□ -0.26
VPS13D-205ENST00000473099 OGDHQ02218 1023 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 GLE1Q53GS7 698 aaKnown RBP13.45□□□□□ -0.26
VPS13D-205ENST00000473099 TEX35Q5T0J7 233 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 DCAF12L1Q5VU92 463 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 KCNT2Q6UVM3 1135 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 CEP57Q86XR8 500 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 GPR65Q8IYL9 337 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 SPPL2BQ8TCT7 592 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 RXFP2Q8WXD0 754 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 RUBCNQ92622 972 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 TMEM169Q96HH4 297 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 YME1L1Q96TA2 773 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 TMEM51Q9NW97 253 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 RRN3Q9NYV6 651 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 MTUS1Q9ULD2 1270 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 STAP1Q9ULZ2 295 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 PCDHB5Q9Y5E4 795 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 DENND4CQ5VZ89 1909 aa13.45□□□□□ -0.26
VPS13D-205ENST00000473099 F8VP50 259 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 PIK3R2O00459 728 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 LRCH4O75427 683 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 GABBR2O75899 941 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 BEST1O76090 585 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 EFEMP2O95967 443 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 FGGP02679 453 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 ACRP10323 421 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 BDNFP23560 247 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 MCM3P25205 808 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 NOS2P35228 1153 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 MARCKSL1P49006 195 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 RNASE9P60153 205 aaKnown RBP13.44□□□□□ -0.26
VPS13D-205ENST00000473099 LONRF2Q1L5Z9 754 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 SLC39A12Q504Y0 691 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 LRRTM3Q86VH5 581 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 RNF168Q8IYW5 571 aaPredicted RBP13.44□□□□□ -0.26
VPS13D-205ENST00000473099 RCOR2Q8IZ40 523 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 SLC39A11Q8N1S5 342 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 EMC1Q8N766 993 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 ZMIZ2Q8NF64 920 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 PIK3R5Q8WYR1 880 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 MS4A14Q96JA4 679 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 C8orf48Q96LL4 319 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 CEP295NLQ96MC4 621 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 SLC9A7Q96T83 725 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 TBCBQ99426 244 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.44□□□□□ -0.26
VPS13D-205ENST00000473099 SPG21Q9NZD8 308 aa13.44□□□□□ -0.26
VPS13D-205ENST00000473099 BACE2Q9Y5Z0 518 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms