RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TIMM13Q9Y5L4 95 aaPredicted RBP12.74□□□□□ -0.37
SQSTM1-206ENST00000466342 ZNF638Q14966 1978 aaKnown RBP12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 ADAMTS9Q9P2N4 1935 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 PLXNB3Q9ULL4 1909 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 LRRIQ3A6PVS8 624 aaPredicted RBP12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 DCLK1O15075 740 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 CYP11A1P05108 521 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 KRT13P13646 458 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 POLR2BP30876 1174 aaKnown RBP12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 TAF6P49848 677 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 AP3M2P53677 418 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 STX17P56962 302 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 MCCD1P59942 119 aaPredicted RBP12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 DLG4P78352 724 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 IRX4P78413 519 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 OVOS1Q6IE37 1185 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 SASS6Q6UVJ0 657 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 CSGALNACT2Q8N6G5 542 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 CXorf38Q8TB03 319 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 ADAM32Q8TC27 787 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 ZNF516Q92618 1163 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 ZNF560Q96MR9 790 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 TMEM209Q96SK2 561 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 SLITRK6Q9H5Y7 841 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 ASAH2Q9NR71 780 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 SIX4Q9UIU6 781 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 DSEQ9UL01 958 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 MYO16Q9Y6X6 1858 aa12.73□□□□□ -0.37
SQSTM1-206ENST00000466342 MAST4O15021 2626 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 IKBKBO14920 756 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 KRT19P08727 400 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 ERCC5P28715 1186 aaPredicted RBP12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 PNPLA4P41247 253 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 RBP5P82980 135 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 STX1AQ16623 288 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 SKOR2Q2VWA4 1001 aaPredicted RBP12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 SV2CQ496J9 727 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 CT47A1Q5JQC4 288 aaPredicted RBP12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 C1orf220Q5T0J3 134 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 TRAPPC11Q7Z392 1133 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 FILIP1Q7Z7B0 1213 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 GPIHBP1Q8IV16 184 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 LRRC52Q8N7C0 313 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 ZFYVE19Q96K21 471 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 MED15Q96RN5 788 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 CACNA2D2Q9NY47 1150 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 HSFX1Q9UBD0 423 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 AGAP1Q9UPQ3 857 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 KIAA1549LQ6ZVL6 1849 aa12.72□□□□□ -0.37
SQSTM1-206ENST00000466342 CEP192Q8TEP8 1941 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 KPNA7A9QM74 516 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 PATE3B3GLJ2 98 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 CYB561D2O14569 222 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 FGFR1OPO95684 399 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 C4BPAP04003 597 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 TRIM49P0CI25 452 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 TRIM49CP0CI26 452 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 SIM1P81133 766 aaPredicted RBP12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 TWF1Q12792 350 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 DUSP4Q13115 394 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 PLD1Q13393 1074 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 TMEM196Q5HYL7 178 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 TDRD10Q5VZ19 366 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 SCARA3Q6AZY7 606 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 METTL23Q86XA0 190 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 ARID3BQ8IVW6 561 aaPredicted RBP12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 THEM5Q8N1Q8 247 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 CHCHD4Q8N4Q1 142 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 SHKBP1Q8TBC3 707 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 LRRC3BQ96PB8 259 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 METTL14Q9HCE5 456 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 ANO10Q9NW15 660 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 OBP2AQ9NY56 170 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 ARMCX3Q9UH62 379 aaPredicted RBP12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 EBF1Q9UH73 591 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 R3HCC1Q9Y3T6 440 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 ASB3Q9Y575 518 aa12.71□□□□□ -0.37
SQSTM1-206ENST00000466342 TNRC6BQ9UPQ9 1833 aaKnown RBP12.71□□□□□ -0.38
SQSTM1-206ENST00000466342 PTPRDP23468 1912 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 SPAARA0A1B0GVQ0 90 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 DPYSL4O14531 572 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 LETM1O95202 739 aaPredicted RBP12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 VNN2O95498 520 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 GNA14O95837 355 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 OR4Q2P0C623 313 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 GBP1P32455 592 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 ALDH1A3P47895 512 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 EPHB3P54753 998 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 PLCB2Q00722 1185 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 TNK2Q07912 1038 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 SCAPQ12770 1279 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 SMARCB1Q12824 385 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 GRSF1Q12849 480 aaKnown RBP eCLIP12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 MYO1EQ12965 1108 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 BIRC3Q13489 604 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 NFKBIBQ15653 356 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 ITPRIPL2Q3MIP1 535 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 ZACNQ401N2 412 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 CCDC40Q4G0X9 1142 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 PMS2CLQ68D20 193 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms