RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 MEI4A8MW99 385 aa14.18□□□□□ -0.14
COL4A1-201ENST00000375820 F5H5T6 163 aa14.18□□□□□ -0.14
COL4A1-201ENST00000375820 RASA1P20936 1047 aa14.18□□□□□ -0.14
COL4A1-201ENST00000375820 MAPK10P53779 464 aa14.18□□□□□ -0.14
COL4A1-201ENST00000375820 CUL2Q13617 745 aa14.18□□□□□ -0.14
COL4A1-201ENST00000375820 AGBL2Q5U5Z8 902 aa14.18□□□□□ -0.14
COL4A1-201ENST00000375820 ATP6V0D2Q8N8Y2 350 aa14.18□□□□□ -0.14
COL4A1-201ENST00000375820 TRPC4APQ8TEL6 797 aa14.18□□□□□ -0.14
COL4A1-201ENST00000375820 CSHL1Q14406 222 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 GPRC5AQ8NFJ5 357 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 TNIP2Q8NFZ5 429 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 NFKBIZQ9BYH8 718 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 HPS5Q9UPZ3 1129 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 IGSF9BQ9UPX0 1349 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 VPS26AO75436 327 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 FYNP06241 537 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 BMPR2Q13873 1038 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 POLD3Q15054 466 aaPredicted RBP14.17□□□□□ -0.14
COL4A1-201ENST00000375820 DDI2Q5TDH0 399 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 SCARA3Q6AZY7 606 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 ACAD10Q6JQN1 1059 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 DDI1Q8WTU0 396 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 ILKAPQ9H0C8 392 aaPredicted RBP14.17□□□□□ -0.14
COL4A1-201ENST00000375820 CARD9Q9H257 536 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 MYOZ2Q9NPC6 264 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 KRT16P08779 473 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 HPGDP15428 266 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 DSG3P32926 999 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 RFC5P40937 340 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 DEFB128Q7Z7B8 93 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 ACOX2Q99424 681 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 TIPINQ9BVW5 301 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 VCPKMTQ9H867 229 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 DISP1Q96F81 1524 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 CCND1P24385 295 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 FBXO16Q8IX29 292 aaPredicted RBP14.17□□□□□ -0.14
COL4A1-201ENST00000375820 ARHGEF3Q9NR81 526 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 PAPOLBQ9NRJ5 636 aaKnown RBP14.17□□□□□ -0.14
COL4A1-201ENST00000375820 TRPC4Q9UBN4 977 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 ATP6V1HQ9UI12 483 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 BAIAP3O94812 1187 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 TMEM253P0C7T8 217 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 KLRK1P26718 216 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 SARSP49591 514 aaKnown RBP14.17□□□□□ -0.14
COL4A1-201ENST00000375820 STRIP1Q5VSL9 837 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 AGAP9Q5VTM2 703 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 KRT77Q7Z794 578 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 CBWD2Q8IUF1 395 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 UNC45BQ8IWX7 931 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 EMC1Q8N766 993 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 TPCN2Q8NHX9 752 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 CIPCQ9C0C6 399 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 NT5MQ9NPB1 228 aa14.17□□□□□ -0.14
COL4A1-201ENST00000375820 KDM6BO15054 1643 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 TRPC5OSA6NMA1 111 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 CBX4O00257 560 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 HALP42357 657 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 ANKS6Q68DC2 871 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 COMMD2Q86X83 199 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 TRIM8Q9BZR9 551 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 DNAJC16Q9Y2G8 782 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 PBRM1Q86U86 1689 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 MAGEB2O15479 319 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 TPH1P17752 444 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 SLC11A2P49281 568 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 PTGISQ16647 500 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 TRIM16LQ309B1 348 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 TYW3Q6IPR3 259 aaKnown RBP14.16□□□□□ -0.14
COL4A1-201ENST00000375820 PRR5LQ6MZQ0 368 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 C16orf86Q6ZW13 317 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 REXO1L1PQ8IX06 675 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 CELF6Q96J87 481 aaKnown RBP14.16□□□□□ -0.14
COL4A1-201ENST00000375820 ISCUQ9H1K1 167 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 APPL1Q9UKG1 709 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 MYO5CQ9NQX4 1742 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 CYB561D2O14569 222 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 CKMP06732 381 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 LAMB3Q13751 1172 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 TRIM71Q2Q1W2 868 aaKnown RBP14.16□□□□□ -0.14
COL4A1-201ENST00000375820 STRA8Q7Z7C7 330 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 FAM131BQ86XD5 332 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 LINC00116Q8NCU8 138 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 FAM172AQ8WUF8 416 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 MKNK1Q9BUB5 465 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 SSU72P8A0A1W2PR75 194 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 FOXN3O00409 490 aaPredicted RBP14.16□□□□□ -0.14
COL4A1-201ENST00000375820 KIAA0391O15091 583 aaKnown RBP14.16□□□□□ -0.14
COL4A1-201ENST00000375820 HNRNPRO43390 633 aaKnown RBP14.16□□□□□ -0.14
COL4A1-201ENST00000375820 KLHL18O94889 574 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 BGNP21810 368 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 RGS2P41220 211 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 DGKKQ5KSL6 1271 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 LRRC8DQ7L1W4 858 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 SH3BP5LQ7L8J4 393 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 PHF21BQ96EK2 531 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 TDRKHQ9Y2W6 561 aaKnown RBP14.16□□□□□ -0.14
COL4A1-201ENST00000375820 SAC3D1A6NKF1 404 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 ZNF286BP0CG31 522 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 CLK2P49760 499 aaKnown RBP14.16□□□□□ -0.14
COL4A1-201ENST00000375820 CPT1AP50416 773 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms