RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 GABBR2O75899 941 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 PLA2G4AP47712 749 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 TBX2Q13207 712 aaPredicted RBP23.38■■□□□ 1.33
SHMT1-203ENST00000354098 ASIC2Q16515 512 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 PRSS36Q5K4E3 855 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 CYP4A22Q5TCH4 519 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 GAREM2Q75VX8 874 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 PDZD4Q76G19 769 aaPredicted RBP23.38■■□□□ 1.33
SHMT1-203ENST00000354098 TMEM150AQ86TG1 271 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 TRMT2BQ96GJ1 504 aaKnown RBP23.38■■□□□ 1.33
SHMT1-203ENST00000354098 IL37Q9NZH6 218 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 NOTCH4Q99466 2003 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 GOLGA6L3A6NEY3 463 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 PIK3R2O00459 728 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 MOSPD3O75425 235 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 IL9P15248 144 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 GABRR2P28476 465 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 FMO1Q01740 532 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 CDR2Q01850 454 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 TRIM14Q14142 442 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 SMAD2Q15796 467 aaKnown RBP23.38■■□□□ 1.33
SHMT1-203ENST00000354098 MEA1Q16626 185 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 NECTIN4Q96NY8 510 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 TTLL2Q9BWV7 592 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 PDCL3Q9H2J4 239 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 GRPEL1Q9HAV7 217 aa23.38■■□□□ 1.33
SHMT1-203ENST00000354098 A0A1W2PRU2 124 aa23.37■■□□□ 1.33
SHMT1-203ENST00000354098 RTN3O95197 1032 aaPredicted RBP23.37■■□□□ 1.33
SHMT1-203ENST00000354098 F11P03951 625 aa23.37■■□□□ 1.33
SHMT1-203ENST00000354098 SKILP12757 684 aa23.37■■□□□ 1.33
SHMT1-203ENST00000354098 FSHRP23945 695 aa23.37■■□□□ 1.33
SHMT1-203ENST00000354098 YWHAQP27348 245 aa23.37■■□□□ 1.33
SHMT1-203ENST00000354098 KIF11P52732 1056 aa23.37■■□□□ 1.33
SHMT1-203ENST00000354098 ADKP55263 362 aaKnown RBP23.37■■□□□ 1.33
SHMT1-203ENST00000354098 RAB41Q5JT25 222 aa23.37■■□□□ 1.33
SHMT1-203ENST00000354098 ZNF677Q86XU0 584 aa23.37■■□□□ 1.33
SHMT1-203ENST00000354098 ING5Q8WYH8 240 aa23.37■■□□□ 1.33
SHMT1-203ENST00000354098 LHX5Q9H2C1 402 aa23.37■■□□□ 1.33
SHMT1-203ENST00000354098 AVENQ9NQS1 362 aaPredicted RBP23.37■■□□□ 1.33
SHMT1-203ENST00000354098 MRPS23Q9Y3D9 190 aaKnown RBP23.37■■□□□ 1.33
SHMT1-203ENST00000354098 GREB1Q4ZG55 1949 aa23.37■■□□□ 1.33
SHMT1-203ENST00000354098 CCDC172P0C7W6 258 aa23.36■■□□□ 1.33
SHMT1-203ENST00000354098 TAF10Q12962 218 aa23.36■■□□□ 1.33
SHMT1-203ENST00000354098 POTEHQ6S545 545 aa23.36■■□□□ 1.33
SHMT1-203ENST00000354098 C1orf131Q8NDD1 294 aaKnown RBP23.36■■□□□ 1.33
SHMT1-203ENST00000354098 SHKBP1Q8TBC3 707 aa23.36■■□□□ 1.33
SHMT1-203ENST00000354098 KCTD13Q8WZ19 329 aa23.36■■□□□ 1.33
SHMT1-203ENST00000354098 PCDHB18PQ96TA0 734 aa23.36■■□□□ 1.33
SHMT1-203ENST00000354098 NUCKS1Q9H1E3 243 aaKnown RBP23.36■■□□□ 1.33
SHMT1-203ENST00000354098 HAUS4Q9H6D7 363 aa23.36■■□□□ 1.33
SHMT1-203ENST00000354098 PATJQ8NI35 1801 aa23.36■■□□□ 1.33
SHMT1-203ENST00000354098 TADA3O75528 432 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 SP100P23497 879 aaPredicted RBP23.35■■□□□ 1.33
SHMT1-203ENST00000354098 TKTL1P51854 596 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 PUS10Q3MIT2 529 aaKnown RBP23.35■■□□□ 1.33
SHMT1-203ENST00000354098 GET4Q7L5D6 327 aaPredicted RBP23.35■■□□□ 1.33
SHMT1-203ENST00000354098 FMNL3Q8IVF7 1028 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 LEMD2Q8NC56 503 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 SYN2Q92777 582 aaPredicted RBP23.35■■□□□ 1.33
SHMT1-203ENST00000354098 AGPAT1Q99943 283 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 ATXN3LQ9H3M9 355 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 ST7Q9NRC1 585 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 UXTQ9UBK9 157 aaPredicted RBP23.35■■□□□ 1.33
SHMT1-203ENST00000354098 CHORDC1Q9UHD1 332 aaPredicted RBP23.35■■□□□ 1.33
SHMT1-203ENST00000354098 USP3Q9Y6I4 520 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 UNC80Q8N2C7 3258 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 FAM92AA1XBS5 289 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 LCP1P13796 627 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 CEBPBP17676 345 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 PRKCIP41743 596 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 PGFP49763 221 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 MRPS5P82675 430 aaKnown RBP23.35■■□□□ 1.33
SHMT1-203ENST00000354098 CYP4F8P98187 520 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 KLHL30Q0D2K2 578 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 ADIGQ0VDE8 80 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 AAK1Q2M2I8 961 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 STXBP5Q5T5C0 1151 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 HGSNATQ68CP4 663 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 OLIG1Q8TAK6 271 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 ATXN2LQ8WWM7 1075 aaKnown RBP23.35■■□□□ 1.33
SHMT1-203ENST00000354098 NDRG1Q92597 394 aaKnown RBP23.35■■□□□ 1.33
SHMT1-203ENST00000354098 FBXO32Q969P5 355 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 SYT11Q9BT88 431 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 LRRC4Q9HBW1 653 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 EHD2Q9NZN4 543 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 TJP2Q9UDY2 1190 aa23.35■■□□□ 1.33
SHMT1-203ENST00000354098 ZNF197O14709 1029 aa23.34■■□□□ 1.33
SHMT1-203ENST00000354098 MFAP3LO75121 409 aa23.34■■□□□ 1.33
SHMT1-203ENST00000354098 TPM1P09493 284 aa23.34■■□□□ 1.33
SHMT1-203ENST00000354098 USP17L7P0C7H9 530 aa23.34■■□□□ 1.33
SHMT1-203ENST00000354098 RPL34P49207 117 aaKnown RBP23.34■■□□□ 1.33
SHMT1-203ENST00000354098 PDCLQ13371 301 aa23.34■■□□□ 1.33
SHMT1-203ENST00000354098 TEAD2Q15562 447 aa23.34■■□□□ 1.33
SHMT1-203ENST00000354098 ZNF571Q7Z3V5 609 aaPredicted RBP23.34■■□□□ 1.33
SHMT1-203ENST00000354098 HSFY1Q96LI6 401 aa23.34■■□□□ 1.33
SHMT1-203ENST00000354098 DNAJC7Q99615 494 aa23.34■■□□□ 1.33
SHMT1-203ENST00000354098 SLC4A5Q9BY07 1137 aa23.34■■□□□ 1.33
SHMT1-203ENST00000354098 FBXO44Q9H4M3 255 aa23.34■■□□□ 1.33
SHMT1-203ENST00000354098 COMMD8Q9NX08 183 aa23.34■■□□□ 1.33
SHMT1-203ENST00000354098 CDC25CP30307 473 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms