RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 GPRIN1Q7Z2K8 1008 aa16.75■□□□□ 0.27
CLN3-201ENST00000333496 CREBRFQ8IUR6 639 aa16.75■□□□□ 0.27
CLN3-201ENST00000333496 KAT5Q92993 513 aa16.75■□□□□ 0.27
CLN3-201ENST00000333496 NT5C1BQ96P26 610 aa16.75■□□□□ 0.27
CLN3-201ENST00000333496 FOXQ1Q9C009 403 aa16.75■□□□□ 0.27
CLN3-201ENST00000333496 RNF38Q9H0F5 515 aa16.75■□□□□ 0.27
CLN3-201ENST00000333496 HDCP19113 662 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 TRIM21P19474 475 aaKnown RBP16.74■□□□□ 0.27
CLN3-201ENST00000333496 ACO1P21399 889 aaKnown RBP16.74■□□□□ 0.27
CLN3-201ENST00000333496 PPP3CCP48454 512 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 ZXDBP98169 803 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 CETN1Q12798 172 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 ZNF268Q14587 947 aaPredicted RBP16.74■□□□□ 0.27
CLN3-201ENST00000333496 TPRG1Q6ZUI0 275 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 ARHGEF19Q8IW93 802 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 YAF2Q8IY57 180 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 PPM1KQ8N3J5 372 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 SHDQ96IW2 340 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 SLITRK1Q96PX8 696 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 CHORDC1Q9UHD1 332 aaPredicted RBP16.74■□□□□ 0.27
CLN3-201ENST00000333496 MTF2Q9Y483 593 aaPredicted RBP16.74■□□□□ 0.27
CLN3-201ENST00000333496 TRAV19A0A0A6YYK7 116 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 KANSL1LA0AUZ9 987 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 GOLGA6L3A6NEY3 463 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 OLFM2O95897 454 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 OAS1P00973 400 aaKnown RBP16.74■□□□□ 0.27
CLN3-201ENST00000333496 CKMP06732 381 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 USP17L7P0C7H9 530 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 PGFP49763 221 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 ARHGAP29Q52LW3 1261 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 PRSS33Q8NF86 280 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 FBXO32Q969P5 355 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 DUSP16Q9BY84 665 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 THAP9Q9H5L6 903 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 KIF9Q9HAQ2 790 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 COMMD8Q9NX08 183 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 DACH1Q9UI36 760 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 ARIH1Q9Y4X5 557 aaPredicted RBP16.74■□□□□ 0.27
CLN3-201ENST00000333496 MYO15AQ9UKN7 3530 aa16.74■□□□□ 0.27
CLN3-201ENST00000333496 MYOFQ9NZM1 2061 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 RNF225M0QZC1 329 aaPredicted RBP16.73■□□□□ 0.27
CLN3-201ENST00000333496 MBD3O95983 291 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 ABL1P00519 1130 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 ZDHHC11BP0C7U3 371 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 GLULP15104 373 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 TNK2Q07912 1038 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 ZNF77Q15935 545 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 TPD52L1Q16890 204 aaPredicted RBP16.73■□□□□ 0.27
CLN3-201ENST00000333496 KLHL40Q2TBA0 621 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 HSP90AA4PQ58FG1 418 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 SNX30Q5VWJ9 437 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 ARHGAP17Q68EM7 881 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 RRAGAQ7L523 313 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 PJA1Q8NG27 643 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 OVCA2Q8WZ82 227 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 KREMEN1Q96MU8 473 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 FAM83CQ9BQN1 747 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 INTS2Q9H0H0 1204 aaKnown RBP16.73■□□□□ 0.27
CLN3-201ENST00000333496 KCNH6Q9H252 994 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 PNPLA8Q9NP80 782 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 GTSE1Q9NYZ3 720 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 DLGAP2Q9P1A6 1054 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 SIT1Q9Y3P8 196 aa16.73■□□□□ 0.27
CLN3-201ENST00000333496 DMDP11532 3685 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 VPS13AQ96RL7 3174 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 MUC6Q6W4X9 2439 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 CACNA1IQ9P0X4 2223 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 DCNP07585 359 aaKnown RBP16.72■□□□□ 0.27
CLN3-201ENST00000333496 PFKLP17858 780 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 YWHAEP62258 255 aaKnown RBP16.72■□□□□ 0.27
CLN3-201ENST00000333496 GCNT1Q02742 428 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 TCF15Q12870 199 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 USP4Q13107 963 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 CT47A1Q5JQC4 288 aaPredicted RBP16.72■□□□□ 0.27
CLN3-201ENST00000333496 TMEM270Q6UE05 265 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 TTC30AQ86WT1 665 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 PDZD8Q8NEN9 1154 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 JAKMIP2Q96AA8 810 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 CRACR2AQ9BSW2 395 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 DNAI2Q9GZS0 605 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 LTB4R2Q9NPC1 389 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 GKN1Q9NS71 199 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 SAMSN1Q9NSI8 373 aaKnown RBP16.72■□□□□ 0.27
CLN3-201ENST00000333496 GMIPQ9P107 970 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 ARHGAP26Q9UNA1 814 aa16.72■□□□□ 0.27
CLN3-201ENST00000333496 SLC9A1P19634 815 aa16.71■□□□□ 0.27
CLN3-201ENST00000333496 RFX1P22670 979 aa16.71■□□□□ 0.27
CLN3-201ENST00000333496 TARSP26639 723 aaKnown RBP16.71■□□□□ 0.27
CLN3-201ENST00000333496 MTIF2P46199 727 aaKnown RBP16.71■□□□□ 0.27
CLN3-201ENST00000333496 SLC7A9P82251 487 aa16.71■□□□□ 0.27
CLN3-201ENST00000333496 TRIM68Q6AZZ1 485 aa16.71■□□□□ 0.27
CLN3-201ENST00000333496 CCDC105Q8IYK2 499 aa16.71■□□□□ 0.27
CLN3-201ENST00000333496 ZNF687Q8N1G0 1237 aa16.71■□□□□ 0.27
CLN3-201ENST00000333496 TTC8Q8TAM2 541 aa16.71■□□□□ 0.27
CLN3-201ENST00000333496 FBXO44Q9H4M3 255 aa16.71■□□□□ 0.27
CLN3-201ENST00000333496 HPS4Q9NQG7 708 aa16.71■□□□□ 0.27
CLN3-201ENST00000333496 THG1LQ9NWX6 298 aaKnown RBP16.71■□□□□ 0.27
CLN3-201ENST00000333496 TMEM63CQ9P1W3 806 aa16.71■□□□□ 0.27
CLN3-201ENST00000333496 PCDHB4Q9Y5E5 795 aa16.71■□□□□ 0.27
CLN3-201ENST00000333496 PIAS3Q9Y6X2 628 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms