RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 TEX13BQ9BXU2 312 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 IQCGQ9H095 443 aaKnown RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 SDCBP2Q9H190 292 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 NGRNQ9NPE2 291 aaKnown RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 FARP1Q9Y4F1 1045 aaPredicted RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 KIAA1217Q5T5P2 1943 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 TRIM49D1C9J1S8 452 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 MCF2LO15068 1137 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 DKC1O60832 514 aaKnown RBP eCLIP9.53□□□□□ -0.88
MSH4-201ENST00000263187 LDHAP00338 332 aaKnown RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 ITGB3P05106 788 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 NFICP08651 508 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 ASPAP45381 313 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 LAMTOR4Q0VGL1 99 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 HSDL1Q3SXM5 330 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 EFHC2Q5JST6 749 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 ANGEL2Q5VTE6 544 aaKnown RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 OR6B2Q6IFH4 312 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 AGGF1Q8N302 714 aaeCLIP9.53□□□□□ -0.88
MSH4-201ENST00000263187 RIBC1Q8N443 379 aaPredicted RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 CCDC110Q8TBZ0 833 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 CYTH2Q99418 400 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 TRIM55Q9BYV6 548 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 CEP41Q9BYV8 373 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 MINDY3Q9H8M7 445 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 USP18Q9UMW8 372 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 SHOC2Q9UQ13 582 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 SNCAIPQ9Y6H5 919 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 TCRBV5S1A1TA0A578 114 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 GRIA1P42261 906 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 ZNF132P52740 706 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 HADHQ16836 314 aaKnown RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 GJC2Q5T442 439 aaPredicted RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 BRSK2Q8IWQ3 736 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 BANPQ8N9N5 519 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 NKD2Q969F2 451 aaPredicted RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 CPB2Q96IY4 423 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 ADGRA2Q96PE1 1338 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 MMP19Q99542 508 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 ADPGKQ9BRR6 497 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 NMUR2Q9GZQ4 415 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 DPPA5A6NC42 116 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 SPDYE5A6NIY4 337 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 MEI4A8MW99 385 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 H3BRJ5 948 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 MAGEB2O15479 319 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 MSCO60682 206 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 RNF8O76064 485 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 ESRRAP11474 423 aaPredicted RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 ATXN1P54253 815 aaKnown RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 ALDH18A1P54886 795 aaKnown RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 AMHR2Q16671 573 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 TREML2Q5T2D2 321 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 RELL1Q8IUW5 271 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 ARID3BQ8IVW6 561 aaPredicted RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.53□□□□□ -0.88
MSH4-201ENST00000263187 AGBL3Q8NEM8 1001 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 MIS12Q9H081 205 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 ACSS3Q9H6R3 686 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 PPARGC1AQ9UBK2 798 aaKnown RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 DRG1Q9Y295 367 aaKnown RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 MAFBQ9Y5Q3 323 aaPredicted RBP9.53□□□□□ -0.88
MSH4-201ENST00000263187 WASF2Q9Y6W5 498 aa9.53□□□□□ -0.88
MSH4-201ENST00000263187 SYNJ2BP-COX16A0A087WUM0 186 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 H0YCG3 227 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 CAPN9O14815 690 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 TOM1L1O75674 476 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 ZWINTO95229 277 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 PDGFRAP16234 1089 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 PTPN4P29074 926 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 PHKA2P46019 1235 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 TMPRSS15P98073 1019 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 ZNF200P98182 395 aaPredicted RBP9.52□□□□□ -0.89
MSH4-201ENST00000263187 ROR1Q01973 937 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 MCL1Q07820 350 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 KRT81Q14533 505 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 LRRC36Q1X8D7 754 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 PPP1R15BQ5SWA1 713 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 ADGRD1Q6QNK2 874 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 ISLR2Q6UXK2 745 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 EFCAB3Q8N7B9 438 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 REPS2Q8NFH8 660 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 RDM1Q8NG50 284 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 DDX50Q9BQ39 737 aaKnown RBP9.52□□□□□ -0.89
MSH4-201ENST00000263187 MRPL4Q9BYD3 311 aaKnown RBP9.52□□□□□ -0.89
MSH4-201ENST00000263187 ACSS2Q9NR19 701 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 FAM49BQ9NUQ9 324 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 PCMTD2Q9NV79 361 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 DDX56Q9NY93 547 aaKnown RBP9.52□□□□□ -0.89
MSH4-201ENST00000263187 COX16Q9P0S2 106 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 SLC24A2Q9UI40 661 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 STYXL1Q9Y6J8 313 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 EME2A4GXA9 379 aaPredicted RBP9.52□□□□□ -0.89
MSH4-201ENST00000263187 COPEO14579 308 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 LGR5O75473 907 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 ARIH2O95376 493 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 TNNC2P02585 160 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 IQCF3P0C7M6 154 aa9.52□□□□□ -0.89
MSH4-201ENST00000263187 GNAZP19086 355 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms