RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C YIL102CP40488 101 aa2.05□□□□□ -2.08
NPL4YBR170C MIC27P50945 234 aa2.05□□□□□ -2.08
NPL4YBR170C LCL2Q08045 131 aa2.05□□□□□ -2.08
NPL4YBR170C RKR1Q04781 1562 aa2.05□□□□□ -2.08
NPL4YBR170C ROM2P51862 1356 aaKnown RBP2.05□□□□□ -2.08
NPL4YBR170C HUA1P40325 198 aa2.05□□□□□ -2.08
NPL4YBR170C VMA21P41806 77 aa2.05□□□□□ -2.08
NPL4YBR170C YMR090WQ04304 227 aaKnown RBP2.05□□□□□ -2.08
NPL4YBR170C SWC7Q06707 132 aa2.05□□□□□ -2.08
NPL4YBR170C YOR072WQ08486 104 aa2.05□□□□□ -2.08
NPL4YBR170C DNF1P32660 1571 aa2.05□□□□□ -2.08
NPL4YBR170C TY4B-JP47024 1803 aa2.04□□□□□ -2.08
NPL4YBR170C ZEO1Q08245 113 aa2.04□□□□□ -2.08
NPL4YBR170C ARO1P08566 1588 aaKnown RBP2.03□□□□□ -2.08
NPL4YBR170C RPS22AP0C0W1 130 aaKnown RBP2.03□□□□□ -2.08
NPL4YBR170C HMRA2P0CY13 119 aa2.03□□□□□ -2.08
NPL4YBR170C MGR2Q02889 113 aa2.03□□□□□ -2.08
NPL4YBR170C NHP10Q03435 203 aa2.03□□□□□ -2.08
NPL4YBR170C YLR363W-AQ3E747 85 aa2.03□□□□□ -2.08
NPL4YBR170C RPS22BQ3E7Y3 130 aaKnown RBP2.03□□□□□ -2.08
NPL4YBR170C YOS1Q3E834 85 aa2.03□□□□□ -2.08
NPL4YBR170C ENV10Q99382 181 aa2.03□□□□□ -2.08
NPL4YBR170C PDR11P40550 1411 aa2.03□□□□□ -2.08
NPL4YBR170C ULS1Q08562 1619 aa2.03□□□□□ -2.08
NPL4YBR170C UBC4P15731 148 aa2.03□□□□□ -2.09
NPL4YBR170C ATG2P53855 1592 aa2.01□□□□□ -2.09
NPL4YBR170C FIT3Q08907 204 aa2.01□□□□□ -2.09
NPL4YBR170C CAT8P39113 1433 aa2□□□□□ -2.09
NPL4YBR170C DNF2Q12675 1612 aa2□□□□□ -2.09
NPL4YBR170C IQG1Q12280 1495 aa2□□□□□ -2.09
NPL4YBR170C PAU16P35994 123 aa2□□□□□ -2.09
NPL4YBR170C PAU15P40585 124 aa2□□□□□ -2.09
NPL4YBR170C HAP1P0CE41 1502 aa1.99□□□□□ -2.09
NPL4YBR170C YBT1P32386 1661 aa1.99□□□□□ -2.09
NPL4YBR170C PDR12Q02785 1511 aa1.98□□□□□ -2.09
NPL4YBR170C COA6Q3E846 104 aa1.98□□□□□ -2.09
NPL4YBR170C LTE1P07866 1435 aa1.98□□□□□ -2.09
NPL4YBR170C YSP2Q06681 1438 aa1.98□□□□□ -2.09
NPL4YBR170C TY1B-DR3Q99231 1755 aa1.98□□□□□ -2.09
NPL4YBR170C YGL041C-BQ3E750 60 aa1.97□□□□□ -2.09
NPL4YBR170C SNF2P22082 1703 aa1.97□□□□□ -2.09
NPL4YBR170C HHY1P39982 102 aa1.97□□□□□ -2.09
NPL4YBR170C MVB12P42939 101 aa1.97□□□□□ -2.09
NPL4YBR170C ICS3P47034 131 aa1.97□□□□□ -2.09
NPL4YBR170C KSH1Q8TGJ3 72 aa1.97□□□□□ -2.09
NPL4YBR170C YRF1-3P0CX14 1859 aa1.97□□□□□ -2.09
NPL4YBR170C YRF1-7P0CX15 1859 aa1.97□□□□□ -2.09
NPL4YBR170C CDC25P04821 1589 aa1.96□□□□□ -2.1
NPL4YBR170C MRPL31P14063 131 aaPredicted RBP1.96□□□□□ -2.1
NPL4YBR170C HUG1Q6Q5K6 68 aa1.96□□□□□ -2.1
NPL4YBR170C TY2B-LR1P0C2J3 1770 aa1.95□□□□□ -2.1
NPL4YBR170C TY2B-FP0CX63 1770 aa1.95□□□□□ -2.1
NPL4YBR170C TY2B-GR2P0CX64 1770 aa1.95□□□□□ -2.1
NPL4YBR170C TY2B-CP25384 1770 aa1.95□□□□□ -2.1
NPL4YBR170C TY2B-DR2Q03494 1770 aa1.95□□□□□ -2.1
NPL4YBR170C TY1B-DR1Q03855 1755 aa1.95□□□□□ -2.1
NPL4YBR170C TY2B-DR3Q07791 1770 aaKnown RBP1.95□□□□□ -2.1
NPL4YBR170C TY2B-OR1Q12113 1770 aa1.95□□□□□ -2.1
NPL4YBR170C TY2B-DR1Q12472 1770 aa1.95□□□□□ -2.1
NPL4YBR170C TY2B-OR2Q12501 1770 aa1.95□□□□□ -2.1
NPL4YBR170C VTH1P40438 1549 aa1.95□□□□□ -2.1
NPL4YBR170C VTH2P40890 1549 aa1.95□□□□□ -2.1
NPL4YBR170C YGR240C-AQ3E786 66 aa1.95□□□□□ -2.1
NPL4YBR170C IML1P47170 1584 aa1.95□□□□□ -2.1
NPL4YBR170C TY2B-BQ12491 1770 aa1.95□□□□□ -2.1
NPL4YBR170C LSM6Q06406 86 aaKnown RBP1.94□□□□□ -2.1
NPL4YBR170C YHR213W-AQ8TGT4 77 aa1.94□□□□□ -2.1
NPL4YBR170C VPS55P47111 140 aa1.94□□□□□ -2.1
NPL4YBR170C YMR321CQ04898 105 aa1.94□□□□□ -2.1
NPL4YBR170C MLP1Q02455 1875 aaKnown RBP1.93□□□□□ -2.1
NPL4YBR170C YHR138CP38841 114 aaPredicted RBP1.93□□□□□ -2.1
NPL4YBR170C MIX14Q04341 121 aa1.93□□□□□ -2.1
NPL4YBR170C YOR093CQ12275 1648 aa1.93□□□□□ -2.1
NPL4YBR170C TY1B-DR5P0C2I2 1755 aa1.92□□□□□ -2.1
NPL4YBR170C TY1B-DR6P0C2I3 1755 aa1.92□□□□□ -2.1
NPL4YBR170C TY1B-LR2P0C2I5 1755 aa1.92□□□□□ -2.1
NPL4YBR170C TY1B-LR3P0C2I6 1755 aaKnown RBP1.92□□□□□ -2.1
NPL4YBR170C TY1B-PR1P0C2I9 1755 aaKnown RBP1.92□□□□□ -2.1
NPL4YBR170C TY1B-PR2P0C2J0 1756 aa1.92□□□□□ -2.1
NPL4YBR170C TY1B-PR3P0C2J1 1755 aaKnown RBP1.92□□□□□ -2.1
NPL4YBR170C TY1B-JR1P47098 1755 aa1.92□□□□□ -2.1
NPL4YBR170C TY1B-ML2Q03434 1755 aaKnown RBP1.92□□□□□ -2.1
NPL4YBR170C TY1B-ER1Q03612 1755 aa1.92□□□□□ -2.1
NPL4YBR170C TY1B-ML1Q04711 1755 aaKnown RBP1.92□□□□□ -2.1
NPL4YBR170C TY1B-GR2Q12269 1755 aa1.92□□□□□ -2.1
NPL4YBR170C TY1B-OLQ12273 1755 aa1.92□□□□□ -2.1
NPL4YBR170C TY1B-PLQ12414 1755 aaKnown RBP1.92□□□□□ -2.1
NPL4YBR170C RPL37AP49166 88 aaKnown RBP1.92□□□□□ -2.1
NPL4YBR170C MRPS12P53732 153 aa1.92□□□□□ -2.1
NPL4YBR170C RSM19P53733 91 aaPredicted RBP1.92□□□□□ -2.1
NPL4YBR170C SCP1Q08873 200 aa1.92□□□□□ -2.1
NPL4YBR170C DOP1Q03921 1698 aa1.92□□□□□ -2.1
NPL4YBR170C LAA1P39526 2014 aa1.92□□□□□ -2.1
NPL4YBR170C YRF1-6P53819 1859 aa1.91□□□□□ -2.1
NPL4YBR170C VMR1P38735 1592 aa1.91□□□□□ -2.1
NPL4YBR170C SRB6P32570 121 aa1.91□□□□□ -2.1
NPL4YBR170C YHR213W-BQ8TGK1 99 aa1.91□□□□□ -2.1
NPL4YBR170C NUP192P47054 1683 aa1.91□□□□□ -2.1
NPL4YBR170C YCL048W-AQ2V2Q2 79 aa1.91□□□□□ -2.1
NPL4YBR170C TY1B-JR2P47100 1755 aaKnown RBP1.91□□□□□ -2.1
Retrieved 100 of 5,963 RNA–protein pairs in 29.2 ms