RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SMYD3Q9H7B4 428 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.9□□□□□ -0.66
LDLR-214ENST00000560628 TMEM30AQ9NV96 361 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 POLR3BQ9NW08 1133 aaPredicted RBP10.9□□□□□ -0.66
LDLR-214ENST00000560628 TRPM5Q9NZQ8 1165 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 USP25Q9UHP3 1055 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 HPSEQ9Y251 543 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 PATJQ8NI35 1801 aa10.9□□□□□ -0.66
LDLR-214ENST00000560628 FANCMQ8IYD8 2048 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 ZNF840PA6NDX5 716 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 TRDMT1O14717 391 aaKnown RBP10.89□□□□□ -0.67
LDLR-214ENST00000560628 TRIM66O15016 1216 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 VNN1O95497 513 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 STAU1O95793 577 aaKnown RBP10.89□□□□□ -0.67
LDLR-214ENST00000560628 EGFP01133 1207 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 NR3C1P04150 777 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 RPN1P04843 607 aaKnown RBP10.89□□□□□ -0.67
LDLR-214ENST00000560628 GJA4P35212 333 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 IFNAR2P48551 515 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 PXNP49023 591 aaPredicted RBP10.89□□□□□ -0.67
LDLR-214ENST00000560628 IFRD2Q12894 506 aaPredicted RBP10.89□□□□□ -0.67
LDLR-214ENST00000560628 TAF10Q12962 218 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 SIM2Q14190 667 aaPredicted RBP10.89□□□□□ -0.67
LDLR-214ENST00000560628 KCNB1Q14721 858 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 ZNF77Q15935 545 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 ZNF699Q32M78 642 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 ZNF667Q5HYK9 610 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 TMEM196Q5HYL7 178 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 CEP135Q66GS9 1140 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 SYNPOQ8N3V7 929 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 B3GALNT2Q8NCR0 500 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 OSCP1Q8WVF1 389 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 SECISBP2LQ93073 1101 aaKnown RBP10.89□□□□□ -0.67
LDLR-214ENST00000560628 C8orf48Q96LL4 319 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 RNF38Q9H0F5 515 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 SDCBP2Q9H190 292 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 ECT2Q9H8V3 914 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 RAB23Q9ULC3 237 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 MAPK8IP1Q9UQF2 711 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 GVINP1Q7Z2Y8 2422 aa10.89□□□□□ -0.67
LDLR-214ENST00000560628 PDXKO00764 312 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 SCAMP3O14828 347 aaKnown RBP10.88□□□□□ -0.67
LDLR-214ENST00000560628 DMDP11532 3685 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 AP3M2P53677 418 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 CLDN10P78369 228 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 ZXDBP98169 803 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 AMPD2Q01433 879 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 USP4Q13107 963 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 ORC1Q13415 861 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 RSPO4Q2I0M5 234 aaPredicted RBP10.88□□□□□ -0.67
LDLR-214ENST00000560628 OTOGLQ3ZCN5 2332 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 ACOT1Q86TX2 421 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 SLC9A9Q8IVB4 645 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 CPA6Q8N4T0 437 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 NUP210Q8TEM1 1887 aaPredicted RBP10.88□□□□□ -0.67
LDLR-214ENST00000560628 KCNK16Q96T55 309 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 P2RY13Q9BPV8 354 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 MED10Q9BTT4 135 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 TTLL2Q9BWV7 592 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 ELOVL4Q9GZR5 314 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 GOLPH3LQ9H4A5 285 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 GDPD2Q9HCC8 539 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 SMPD4Q9NXE4 827 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 CHORDC1Q9UHD1 332 aaPredicted RBP10.88□□□□□ -0.67
LDLR-214ENST00000560628 GMEB2Q9UKD1 530 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 USP18Q9UMW8 372 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 ARHGAP26Q9UNA1 814 aa10.88□□□□□ -0.67
LDLR-214ENST00000560628 ZNF638Q14966 1978 aaKnown RBP10.87□□□□□ -0.67
LDLR-214ENST00000560628 LEFTY2O00292 366 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 CALUO43852 315 aaPredicted RBP10.87□□□□□ -0.67
LDLR-214ENST00000560628 RNF40O75150 1001 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 PAPSS2O95340 614 aaPredicted RBP10.87□□□□□ -0.67
LDLR-214ENST00000560628 YWHAQP27348 245 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 NOP14P78316 857 aaKnown RBP10.87□□□□□ -0.67
LDLR-214ENST00000560628 SPEM2Q0P670 501 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 NR1H3Q13133 447 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 SGSM1Q2NKQ1 1148 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 EML3Q32P44 896 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 ZACNQ401N2 412 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 SPOPLQ6IQ16 392 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 PAQR9Q6ZVX9 377 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 SV2AQ7L0J3 742 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 LONP2Q86WA8 852 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 NUP93Q8N1F7 819 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 SCAMP5Q8TAC9 235 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 TMC2Q8TDI7 906 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 ATP2A3Q93084 1043 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 CCDC47Q96A33 483 aaKnown RBP10.87□□□□□ -0.67
LDLR-214ENST00000560628 CEP295NLQ96MC4 621 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 VRTNQ9H8Y1 702 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 PARD6AQ9NPB6 346 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 EHD2Q9NZN4 543 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 SLC8A2Q9UPR5 921 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 FRMD4BQ9Y2L6 1034 aa10.87□□□□□ -0.67
LDLR-214ENST00000560628 KIF26AQ9ULI4 1882 aaPredicted RBP10.87□□□□□ -0.67
LDLR-214ENST00000560628 ATG2BQ96BY7 2078 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 DENND4CQ5VZ89 1909 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 FAM237AA0A1B0GTK4 181 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 ATG13O75143 517 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 RHOBTB3O94955 611 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms