RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 A8MXQ7 604 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 K7ESF4 209 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 MYL1P05976 194 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 RETP07949 1114 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 P4HA1P13674 534 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 ARSAP15289 507 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 TRIM21P19474 475 aaKnown RBP13.59□□□□□ -0.23
LINC00643-202ENST00000553426 HOXA6P31267 233 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 NOP14P78316 857 aaKnown RBP13.59□□□□□ -0.23
LINC00643-202ENST00000553426 ZNF77Q15935 545 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 RSPO4Q2I0M5 234 aaPredicted RBP13.59□□□□□ -0.23
LINC00643-202ENST00000553426 ZNF667Q5HYK9 610 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 TDRD10Q5VZ19 366 aaKnown RBP13.59□□□□□ -0.23
LINC00643-202ENST00000553426 GRAMD1CQ8IYS0 662 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 SH3RF2Q8TEC5 729 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 PAGE5Q96GU1 130 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 C8orf48Q96LL4 319 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 ECT2Q9H8V3 914 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 DLL3Q9NYJ7 618 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 CDV3Q9UKY7 258 aaKnown RBP13.59□□□□□ -0.23
LINC00643-202ENST00000553426 ARHGAP26Q9UNA1 814 aa13.59□□□□□ -0.23
LINC00643-202ENST00000553426 ZNF638Q14966 1978 aaKnown RBP13.59□□□□□ -0.23
LINC00643-202ENST00000553426 C2orf78A6NCI8 922 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 OTOL1A6NHN0 477 aaPredicted RBP13.58□□□□□ -0.24
LINC00643-202ENST00000553426 F8VP50 259 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 FOXD2O60548 495 aaPredicted RBP13.58□□□□□ -0.24
LINC00643-202ENST00000553426 LRP3O75074 770 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 NFATC1O95644 943 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 ABL1P00519 1130 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 CMA1P23946 247 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 GJA4P35212 333 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 GALK1P51570 392 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 MYL6P60660 151 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 KRT85P78386 507 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 USP4Q13107 963 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 ZNF699Q32M78 642 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 WDR44Q5JSH3 913 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 FSTL4Q6MZW2 842 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 B3GALNT2Q8NCR0 500 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 CD101Q93033 1021 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 TNIP3Q96KP6 325 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 SPATA32Q96LK8 384 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 SLC22A12Q96S37 553 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 GCNT4Q9P109 453 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 ATP6V1DQ9Y5K8 247 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 WNT6Q9Y6F9 365 aa13.58□□□□□ -0.24
LINC00643-202ENST00000553426 DENND4CQ5VZ89 1909 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 CCDC163A0A0D9SF12 145 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 A0A1B0GVL5 298 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 PDXKO00764 312 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 SLC9A3R1O14745 358 aaPredicted RBP13.57□□□□□ -0.24
LINC00643-202ENST00000553426 HRO43593 1189 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 ACTN4O43707 911 aaKnown RBP13.57□□□□□ -0.24
LINC00643-202ENST00000553426 RNF40O75150 1001 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 RTN3O95197 1032 aaPredicted RBP13.57□□□□□ -0.24
LINC00643-202ENST00000553426 TCF3P15923 654 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 CASP4P49662 377 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 SPEM2Q0P670 501 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 IFRD2Q12894 506 aaPredicted RBP13.57□□□□□ -0.24
LINC00643-202ENST00000553426 STK4Q13043 487 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 NCOA4Q13772 614 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 PKP1Q13835 747 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 EML3Q32P44 896 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 KMT5BQ4FZB7 885 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 WDR5BQ86VZ2 330 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 SLC9A9Q8IVB4 645 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 NUP93Q8N1F7 819 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 CAMKK1Q8N5S9 505 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 PDZD8Q8NEN9 1154 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 PARD3BQ8TEW8 1205 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 ZNF516Q92618 1163 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 MED10Q9BTT4 135 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 TTLL2Q9BWV7 592 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 VRTNQ9H8Y1 702 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 FRMD4BQ9Y2L6 1034 aa13.57□□□□□ -0.24
LINC00643-202ENST00000553426 ZNF840PA6NDX5 716 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 CALUO43852 315 aaPredicted RBP13.56□□□□□ -0.24
LINC00643-202ENST00000553426 KLRC4O43908 158 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 EGFP01133 1207 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 RPN1P04843 607 aaKnown RBP13.56□□□□□ -0.24
LINC00643-202ENST00000553426 PFKFB1P16118 471 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 YWHAQP27348 245 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 SYKP43405 635 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 USP46P62068 366 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 SLC7A9P82251 487 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 DMWDQ09019 674 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 TAF10Q12962 218 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 SGSM1Q2NKQ1 1148 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 DDX42Q86XP3 938 aaKnown RBP eCLIP13.56□□□□□ -0.24
LINC00643-202ENST00000553426 KIAA1958Q8N8K9 716 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 KIAA0895Q8NCT3 520 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 RIN3Q8TB24 985 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 TMEM174Q8WUU8 243 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 ACDQ96AP0 544 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 CCDC34Q96HJ3 373 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 CNTNAP3BQ96NU0 1288 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 CNTNAP3Q9BZ76 1288 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 ZNF518BQ9C0D4 1074 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 DNAI2Q9GZS0 605 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 XYLT2Q9H1B5 865 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms