RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 HDCP19113 662 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 TRIM21P19474 475 aaKnown RBP13.99□□□□□ -0.17
RTN3-212ENST00000543123 CASP1P29466 404 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 FNTBP49356 437 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 DNM1Q05193 864 aaKnown RBP13.99□□□□□ -0.17
RTN3-212ENST00000543123 CCDC142Q17RM4 750 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 SCARA3Q6AZY7 606 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 TRIM68Q6AZZ1 485 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 CEP68Q76N32 757 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 WDR5BQ86VZ2 330 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 KIAA1958Q8N8K9 716 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 B3GALNT2Q8NCR0 500 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 SLITRK1Q96PX8 696 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 P2RY13Q9BPV8 354 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 TTLL2Q9BWV7 592 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 ECT2Q9H8V3 914 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 DLL3Q9NYJ7 618 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 NXF1Q9UBU9 619 aaKnown RBP13.99□□□□□ -0.17
RTN3-212ENST00000543123 CDV3Q9UKY7 258 aaKnown RBP13.99□□□□□ -0.17
RTN3-212ENST00000543123 SLC8A2Q9UPR5 921 aa13.99□□□□□ -0.17
RTN3-212ENST00000543123 CCDC163A0A0D9SF12 145 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 CST3P01034 146 aaPredicted RBP13.98□□□□□ -0.17
RTN3-212ENST00000543123 ARSAP15289 507 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 PTPN1P18031 435 aaKnown RBP13.98□□□□□ -0.17
RTN3-212ENST00000543123 KRT85P78386 507 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 RSPO4Q2I0M5 234 aaPredicted RBP13.98□□□□□ -0.17
RTN3-212ENST00000543123 ZNF699Q32M78 642 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 WDR44Q5JSH3 913 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 TDRD10Q5VZ19 366 aaKnown RBP13.98□□□□□ -0.17
RTN3-212ENST00000543123 HEATR6Q6AI08 1181 aaKnown RBP13.98□□□□□ -0.17
RTN3-212ENST00000543123 SLC9A9Q8IVB4 645 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 ARL14EPQ8N8R7 260 aaPredicted RBP13.98□□□□□ -0.17
RTN3-212ENST00000543123 PDZD8Q8NEN9 1154 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 SH3RF2Q8TEC5 729 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 TMEM174Q8WUU8 243 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 ACDQ96AP0 544 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 TNIP3Q96KP6 325 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 CYP2S1Q96SQ9 504 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 MRPL45Q9BRJ2 306 aaKnown RBP13.98□□□□□ -0.17
RTN3-212ENST00000543123 VRTNQ9H8Y1 702 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 GCNT4Q9P109 453 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 SERTAD1Q9UHV2 236 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 ATP6V1DQ9Y5K8 247 aa13.98□□□□□ -0.17
RTN3-212ENST00000543123 C2orf78A6NCI8 922 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 F8VP50 259 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 PDXKO00764 312 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 SLC9A3R1O14745 358 aaPredicted RBP13.97□□□□□ -0.17
RTN3-212ENST00000543123 ACTN4O43707 911 aaKnown RBP13.97□□□□□ -0.17
RTN3-212ENST00000543123 RTN3O95197 1032 aaPredicted RBP13.97□□□□□ -0.17
RTN3-212ENST00000543123 PFKFB1P16118 471 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 CMA1P23946 247 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 GJA4P35212 333 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 MYL6P60660 151 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 NCOA4Q13772 614 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 LPAL2Q16609 132 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 ZNF667Q5HYK9 610 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 FSTL4Q6MZW2 842 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 DDX42Q86XP3 938 aaKnown RBP eCLIP13.97□□□□□ -0.17
RTN3-212ENST00000543123 GRAMD1CQ8IYS0 662 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 CAMKK1Q8N5S9 505 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 PARD3BQ8TEW8 1205 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 CD101Q93033 1021 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 PAGE5Q96GU1 130 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 CCDC34Q96HJ3 373 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 SPATA32Q96LK8 384 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 SLC22A12Q96S37 553 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 XYLT2Q9H1B5 865 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 FRMD4BQ9Y2L6 1034 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 WNT6Q9Y6F9 365 aa13.97□□□□□ -0.17
RTN3-212ENST00000543123 PTPRDP23468 1912 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 OTOL1A6NHN0 477 aaPredicted RBP13.96□□□□□ -0.17
RTN3-212ENST00000543123 CALUO43852 315 aaPredicted RBP13.96□□□□□ -0.17
RTN3-212ENST00000543123 RNF40O75150 1001 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 AKAP3O75969 853 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 RPN1P04843 607 aaKnown RBP13.96□□□□□ -0.17
RTN3-212ENST00000543123 CLDN10P78369 228 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 SLC7A9P82251 487 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 DMWDQ09019 674 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 STK4Q13043 487 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 PKP1Q13835 747 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 EML3Q32P44 896 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 SPRYD3Q8NCJ5 442 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 RIN3Q8TB24 985 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 OVCA2Q8WZ82 227 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 TAF4BQ92750 862 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 DNAI2Q9GZS0 605 aa13.96□□□□□ -0.17
RTN3-212ENST00000543123 HELZP42694 1942 aaKnown RBP13.96□□□□□ -0.18
RTN3-212ENST00000543123 GREB1Q4ZG55 1949 aa13.96□□□□□ -0.18
RTN3-212ENST00000543123 ZNF840PA6NDX5 716 aa13.95□□□□□ -0.18
RTN3-212ENST00000543123 LRRIQ3A6PVS8 624 aaPredicted RBP13.95□□□□□ -0.18
RTN3-212ENST00000543123 HRO43593 1189 aa13.95□□□□□ -0.18
RTN3-212ENST00000543123 KLRC4O43908 158 aa13.95□□□□□ -0.18
RTN3-212ENST00000543123 RPP40O75818 363 aaKnown RBP13.95□□□□□ -0.18
RTN3-212ENST00000543123 ABL1P00519 1130 aa13.95□□□□□ -0.18
RTN3-212ENST00000543123 EGFP01133 1207 aa13.95□□□□□ -0.18
RTN3-212ENST00000543123 NR3C1P04150 777 aa13.95□□□□□ -0.18
RTN3-212ENST00000543123 SYKP43405 635 aa13.95□□□□□ -0.18
RTN3-212ENST00000543123 CASP4P49662 377 aa13.95□□□□□ -0.18
RTN3-212ENST00000543123 GALK1P51570 392 aa13.95□□□□□ -0.18
RTN3-212ENST00000543123 USP46P62068 366 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms