RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PCSK1P29120 753 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 MAGEA11P43364 429 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 LHX1P48742 406 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 CREB5Q02930 508 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 C2orf27AQ580R0 203 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 C12orf40Q86WS4 652 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 ELMO3Q96BJ8 720 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 PCED1BQ96HM7 432 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 EDEM2Q9BV94 578 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 LSM14BQ9BX40 385 aaKnown RBP16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 DPEP3Q9H4B8 488 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 EBF1Q9UH73 591 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 PCDHGA5Q9Y5G8 931 aa16.54■□□□□ 0.24
CLSTN3-213ENST00000541953 BCLAF3A2AJT9 711 aaKnown RBP16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 FOXD2O60548 495 aaPredicted RBP16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 CST3P01034 146 aaPredicted RBP16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 TCF3P15923 654 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 SLC6A11P48066 632 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 DGKEP52429 567 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 CYP27A1Q02318 531 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 KCNB1Q14721 858 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 FBXO43Q4G163 708 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 MDH1BQ5I0G3 518 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 RNF43Q68DV7 783 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 ANO7Q6IWH7 933 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 PSAPL1Q6NUJ1 521 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 TMEM92Q6UXU6 159 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 FILIP1Q7Z7B0 1213 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 CCDC33Q8N5R6 958 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 FRMD1Q8N878 549 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 MDGA1Q8NFP4 955 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 SPATA18Q8TC71 538 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 CHAMP1Q96JM3 812 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 VPS45Q9NRW7 570 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 SMPD4Q9NXE4 827 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 HSPBP1Q9NZL4 362 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 MAGEC2Q9UBF1 373 aaPredicted RBP16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 ANGPTL2Q9UKU9 493 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 CDH9Q9ULB4 789 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 MTMR6Q9Y217 621 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 IGF2RP11717 2491 aa16.53■□□□□ 0.24
CLSTN3-213ENST00000541953 ZNF840PA6NDX5 716 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 C4orf47A7E2U8 309 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 F8VP50 259 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 TGFB1I1O43294 461 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 TOP3BO95985 862 aaKnown RBP16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 WARSP23381 471 aaKnown RBP16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 CASP1P29466 404 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 GRIK1P39086 918 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 AMPD2Q01433 879 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 E2F4Q16254 413 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 PMS2CLQ68D20 193 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 CCDC73Q6ZRK6 1079 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 DENND5BQ6ZUT9 1274 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 TSTD1Q8NFU3 115 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 ACDQ96AP0 544 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 ANKRD36BP1Q96IX9 119 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 SPATA17Q96L03 361 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 TTLL2Q9BWV7 592 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 ZNF518BQ9C0D4 1074 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 FOXD4L1Q9NU39 408 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 CPQQ9Y646 472 aa16.52■□□□□ 0.24
CLSTN3-213ENST00000541953 CLDN5O00501 218 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 CAVIN2O95810 425 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 OLFM2O95897 454 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 GBP1P32455 592 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 TXLNAP40222 546 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 ALCAMQ13740 583 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 SLC39A14Q15043 492 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 EMC10Q5UCC4 262 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 C4orf50Q6ZRC1 276 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 EPM2AIP1Q7L775 607 aaPredicted RBP16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 TRAPPC11Q7Z392 1133 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 RASSF3Q86WH2 238 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 RDH13Q8NBN7 331 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 MYCBPAPQ8TBZ2 947 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 DDX1Q92499 740 aaKnown RBP16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 WBP2Q969T9 261 aa16.51■□□□□ 0.23
CLSTN3-213ENST00000541953 NFATC1O95644 943 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 OAS1P00973 400 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 TNNC2P02585 160 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 SPINK2P20155 84 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 SLC7A9P82251 487 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 SHC2P98077 582 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 IFRD2Q12894 506 aaPredicted RBP16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 TAF10Q12962 218 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 MYO1EQ12965 1108 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 ELF2Q15723 593 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 VSTM1Q6UX27 236 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 DPH6Q7L8W6 267 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 WDR49Q8IV35 697 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 ALLCQ8N6M5 410 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 FSIP1Q8NA03 581 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 PLEKHO2Q8TD55 490 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 RLN3Q8WXF3 142 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 ZNF516Q92618 1163 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 ZFRQ96KR1 1074 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 MMS19Q96T76 1030 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 TRPM5Q9NZQ8 1165 aa16.5■□□□□ 0.23
CLSTN3-213ENST00000541953 MMP17Q9ULZ9 603 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms