RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 HHLA1C9JL84 531 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 TRIM66O15016 1216 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 NARSO43776 548 aaKnown RBP16.7■□□□□ 0.26
RPAIN-206ENST00000539417 LETM1O95202 739 aaPredicted RBP16.7■□□□□ 0.26
RPAIN-206ENST00000539417 PNMA6AP0CW24 399 aaPredicted RBP16.7■□□□□ 0.26
RPAIN-206ENST00000539417 PGFP49763 221 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 GCNT1Q02742 428 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 IFRD2Q12894 506 aaPredicted RBP16.7■□□□□ 0.26
RPAIN-206ENST00000539417 TAF12Q16514 161 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 PTPN21Q16825 1174 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 ARHGAP44Q17R89 818 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 SKOR2Q2VWA4 1001 aaPredicted RBP16.7■□□□□ 0.26
RPAIN-206ENST00000539417 FAM78AQ5JUQ0 283 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 RSPRY1Q96DX4 576 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 MYRFLQ96LU7 910 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 KXD1Q9BQD3 176 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 CBX8Q9HC52 389 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 CSNK1G1Q9HCP0 422 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 APEX2Q9UBZ4 518 aa16.7■□□□□ 0.26
RPAIN-206ENST00000539417 ZNF638Q14966 1978 aaKnown RBP16.7■□□□□ 0.26
RPAIN-206ENST00000539417 PATJQ8NI35 1801 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 TULP2O00295 520 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 MICAL2O94851 1124 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 ANXA13P27216 316 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 ZNF132P52740 706 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 GPR158Q5T848 1215 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 TXNDC8Q6A555 127 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 TANGO2Q6ICL3 276 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 DENND5BQ6ZUT9 1274 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 LUZP1Q86V48 1076 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 TTC30AQ86WT1 665 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 LEMD2Q8NC56 503 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 RBBP8NLQ8NC74 664 aaPredicted RBP16.69■□□□□ 0.26
RPAIN-206ENST00000539417 TRMT2BQ96GJ1 504 aaKnown RBP16.69■□□□□ 0.26
RPAIN-206ENST00000539417 SLC46A2Q9BY10 475 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 SMG9Q9H0W8 520 aaKnown RBP16.69■□□□□ 0.26
RPAIN-206ENST00000539417 DMAP1Q9NPF5 467 aaPredicted RBP16.69■□□□□ 0.26
RPAIN-206ENST00000539417 CNTN6Q9UQ52 1028 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 MYH10P35580 1976 aa16.69■□□□□ 0.26
RPAIN-206ENST00000539417 ANAPC1Q9H1A4 1944 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 EPHB6O15197 1021 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 FAM200BP0CF97 657 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 CD19P15391 556 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 BRD2P25440 801 aaKnown RBP16.68■□□□□ 0.26
RPAIN-206ENST00000539417 VIPR2P41587 438 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 SLC5A3P53794 718 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 GOLGA7BQ2TAP0 167 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 ARHGAP17Q68EM7 881 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 SLC44A3Q8N4M1 653 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 TTC39CQ8N584 583 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 ZSCAN18Q8TBC5 510 aaPredicted RBP16.68■□□□□ 0.26
RPAIN-206ENST00000539417 ASB16Q96NS5 453 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 LRRC3BQ96PB8 259 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 SLC22A12Q96S37 553 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 TTLL2Q9BWV7 592 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 LSM14BQ9BX40 385 aaKnown RBP16.68■□□□□ 0.26
RPAIN-206ENST00000539417 GPR88Q9GZN0 384 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 NAT10Q9H0A0 1025 aaKnown RBP16.68■□□□□ 0.26
RPAIN-206ENST00000539417 GDE1Q9NZC3 331 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 DNAJC12Q9UKB3 198 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 FHOD1Q9Y613 1164 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 ATP8B3O60423 1300 aa16.68■□□□□ 0.26
RPAIN-206ENST00000539417 LRRC10BA6NIK2 292 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 PI4K2BG5E9Z4 385 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 PRAMEF12O95522 483 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 CFHP08603 1231 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 YWHAEP62258 255 aaKnown RBP16.67■□□□□ 0.26
RPAIN-206ENST00000539417 TAF10Q12962 218 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 IER5LQ5T953 404 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 NUP93Q8N1F7 819 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 UBA3Q8TBC4 463 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 DUSP16Q9BY84 665 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 SLITRK6Q9H5Y7 841 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 FAM124BQ9H5Z6 455 aaPredicted RBP16.67■□□□□ 0.26
RPAIN-206ENST00000539417 TSPAN16Q9UKR8 245 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 ZFP37Q9Y6Q3 630 aaPredicted RBP16.67■□□□□ 0.26
RPAIN-206ENST00000539417 COL4A3Q01955 1670 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 C2orf78A6NCI8 922 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 O00370 1275 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 TEX33O43247 280 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 DCXO43602 365 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 VDRP11473 427 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 KRT5P13647 590 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 NPR3P17342 541 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 CDK11BP21127 795 aaKnown RBP16.67■□□□□ 0.26
RPAIN-206ENST00000539417 CDC25CP30307 473 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 MFAP3P55082 362 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 SGO2Q562F6 1265 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 KLHDC7AQ5VTJ3 777 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 MAB21L3Q8N8X9 362 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 RIN3Q8TB24 985 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 SHC3Q92529 594 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 CYP2S1Q96SQ9 504 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 GANQ9H2C0 597 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 TASP1Q9H6P5 420 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 IL37Q9NZH6 218 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 SIK3Q9Y2K2 1263 aa16.67■□□□□ 0.26
RPAIN-206ENST00000539417 FAM86C2PA6NEL3 165 aa16.66■□□□□ 0.26
RPAIN-206ENST00000539417 LGALS16A8MUM7 142 aa16.66■□□□□ 0.26
RPAIN-206ENST00000539417 GABBR2O75899 941 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms