RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CACNA2D1P54289 1103 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 BPIFB4P59827 614 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 CCZ1BP86790 482 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 CCZ1P86791 482 aaPredicted RBP16.22■□□□□ 0.19
LSM1-203ENST00000520755 CDK17Q00537 523 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 CDR2Q01850 454 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 ITIH3Q06033 890 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 PLD1Q13393 1074 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 GOLGA7BQ2TAP0 167 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 ASTE1Q2TB18 679 aaPredicted RBP16.22■□□□□ 0.19
LSM1-203ENST00000520755 LEXMQ3ZCV2 418 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 CFAP221Q4G0U5 840 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 SGO2Q562F6 1265 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 TDRD12Q587J7 1177 aaKnown RBP16.22■□□□□ 0.19
LSM1-203ENST00000520755 RTL10Q7L3V2 364 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 FAM35AQ86V20 835 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 TTC30AQ86WT1 665 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 FMNL3Q8IVF7 1028 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 SCN4BQ8IWT1 228 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 SMRP1Q8NCR6 262 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 CMASQ8NFW8 434 aaPredicted RBP16.22■□□□□ 0.19
LSM1-203ENST00000520755 SLC2A14Q8TDB8 520 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 SMG7Q92540 1137 aaKnown RBP16.22■□□□□ 0.19
LSM1-203ENST00000520755 ZNF707Q96C28 371 aaPredicted RBP16.22■□□□□ 0.19
LSM1-203ENST00000520755 PCDHB18PQ96TA0 734 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 ZNF518BQ9C0D4 1074 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 S1PR5Q9H228 398 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 ADAM7Q9H2U9 754 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 KCNF1Q9H3M0 494 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 HSFX1Q9UBD0 423 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 TSPAN16Q9UKR8 245 aa16.22■□□□□ 0.19
LSM1-203ENST00000520755 DENND4AQ7Z401 1863 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 GRXCR2A6NFK2 248 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 XYLBO75191 536 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 MICAL2O94851 1124 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 ATF6P18850 670 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 HOXA9P31269 272 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 GRIK1P39086 918 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 EPHB3P54753 998 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 MAPK8IP2Q13387 824 aaPredicted RBP16.21■□□□□ 0.19
LSM1-203ENST00000520755 SMAD4Q13485 552 aaKnown RBP16.21■□□□□ 0.19
LSM1-203ENST00000520755 PKDCCQ504Y2 493 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 SDHAF4Q5VUM1 108 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 DENND1BQ6P3S1 775 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 LCLAT1Q6UWP7 414 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 GPR149Q86SP6 731 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 LRRC8AQ8IWT6 810 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 ELMOD1Q8N336 334 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 GIPC2Q8TF65 315 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 CYFIP2Q96F07 1278 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 HNRNPABQ99729 332 aaKnown RBP16.21■□□□□ 0.19
LSM1-203ENST00000520755 AGPAT1Q99943 283 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 KRT82Q9NSB4 513 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 KIAA1257Q9ULG3 409 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 NENFQ9UMX5 172 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 PCDHGC3Q9UN70 934 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 USP15Q9Y4E8 981 aaPredicted RBP16.21■□□□□ 0.19
LSM1-203ENST00000520755 ANAPC1Q9H1A4 1944 aa16.21■□□□□ 0.19
LSM1-203ENST00000520755 SPTBN5Q9NRC6 3674 aaKnown RBP16.2■□□□□ 0.18
LSM1-203ENST00000520755 SOWAHDA6NJG2 315 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 DDX3XO00571 662 aaKnown RBP eCLIP16.2■□□□□ 0.182e-7■■■■■ 39.2
LSM1-203ENST00000520755 MBTPS2O43462 519 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 CCDC172P0C7W6 258 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 EIF4A3P38919 411 aaKnown RBP16.2■□□□□ 0.18
LSM1-203ENST00000520755 MAGEA11P43364 429 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 RPL10AP62906 217 aaKnown RBP16.2■□□□□ 0.18
LSM1-203ENST00000520755 MTF1Q14872 753 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 CNGA2Q16280 664 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 DDR2Q16832 855 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 ATAT1Q5SQI0 421 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 PTCRAQ6ISU1 281 aaPredicted RBP16.2■□□□□ 0.18
LSM1-203ENST00000520755 ZNF677Q86XU0 584 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 PASD1Q8IV76 773 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 STKLD1Q8NE28 680 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 SLC30A5Q8TAD4 765 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.2■□□□□ 0.18
LSM1-203ENST00000520755 GPR152Q8TDT2 470 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 SMARCD1Q96GM5 515 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 ZNF512Q96ME7 567 aaPredicted RBP16.2■□□□□ 0.18
LSM1-203ENST00000520755 RIPOR3Q96MK2 946 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 HCFC1R1Q9NWW0 138 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 CYTH4Q9UIA0 394 aa16.2■□□□□ 0.18
LSM1-203ENST00000520755 NOTCH4Q99466 2003 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 TCF20Q9UGU0 1960 aaKnown RBP16.19■□□□□ 0.18
LSM1-203ENST00000520755 SSU72P8A0A1W2PR75 194 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 FAM170AA1A519 330 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 M0QYV0 167 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 TULP2O00295 520 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 AP1G2O75843 785 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 BEST1O76090 585 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 CYP1A1P04798 512 aaPredicted RBP16.19■□□□□ 0.18
LSM1-203ENST00000520755 ANXA13P27216 316 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 MTHFRP42898 656 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 KCNQ1P51787 676 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 NOMO3P69849 1222 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 VEPH1Q14D04 833 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 AAK1Q2M2I8 961 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 VSTM1Q6UX27 236 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 RAD9BQ6WBX8 426 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 GRASPQ7Z6J2 395 aaPredicted RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms