RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 KRT10P13645 584 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 P4HA1P13674 534 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 ADSLP30566 484 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 MSX2P35548 267 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 DRAP1Q14919 205 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 SIGIRRQ6IA17 410 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 KRT80Q6KB66 452 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 NSMFQ6X4W1 530 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 DEFB107AQ8IZN7 70 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 ZNF276Q8N554 614 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 TBC1D15Q8TC07 691 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 OSCP1Q8WVF1 389 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 EFHD2Q96C19 240 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 LRRC19Q9H756 370 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 TBC1D14Q9P2M4 693 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 SATB2Q9UPW6 733 aa12.55□□□□□ -0.4
LIMCH1-213ENST00000511496 KIF13AQ9H1H9 1805 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 LOC105371267A0A1B0GV96 52 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 H0YIN7 160 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 FYNP06241 537 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 TUBA1BP68363 451 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 FGD3Q5JSP0 725 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 C4orf22Q6V702 233 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 LDHAL6AQ6ZMR3 332 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 TUBA1AQ71U36 451 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 ITIH5Q86UX2 942 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 OTUD5Q96G74 571 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 DCLK3Q9C098 648 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 VPS11Q9H270 941 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 ZNF330Q9Y3S2 320 aaPredicted RBP12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 ROBO2Q9HCK4 1378 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 LPXNO60711 386 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 ZMPSTE24O75844 475 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 SULT1C4O75897 302 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 CALM1P0DP23 149 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 CALM2P0DP24 149 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 CALM3P0DP25 149 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 VDRP11473 427 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 STAT2P52630 851 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 SLC18A1P54219 525 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 KRT76Q01546 638 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 DLGAP5Q15398 846 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 FAM47AQ5JRC9 791 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 RWDD4Q6NW29 188 aaKnown RBP12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 PRR23CQ6ZRP0 262 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 TAS2R42Q7RTR8 314 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 GPR180Q86V85 440 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 MMAAQ8IVH4 418 aaKnown RBP12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 LILRB4Q8NHJ6 448 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 SLC30A5Q8TAD4 765 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 NLRP7Q8WX94 980 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 PNMA5Q96PV4 448 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 CNNM1Q9NRU3 951 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 PCDHB13Q9Y5F0 798 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 ST14Q9Y5Y6 855 aa12.54□□□□□ -0.4
LIMCH1-213ENST00000511496 H3BNX3 289 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 GOLGA8SH3BPF8 625 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 GOLGA8MH3BSY2 632 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 BANF1O75531 89 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 IST1P53990 364 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 MRPS22P82650 360 aaKnown RBP12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 CAV1Q03135 178 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 CRY1Q16526 586 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 PGS1Q32NB8 556 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 GPR107Q5VW38 600 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 TMC5Q6UXY8 1006 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 SETD3Q86TU7 594 aaPredicted RBP12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 RTKN2Q8IZC4 609 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 GRK7Q8WTQ7 553 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 JADE3Q92613 823 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 DCPSQ96C86 337 aaKnown RBP12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 MXD3Q9BW11 206 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 PSMC3IPQ9P2W1 217 aaPredicted RBP12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 PI4KBQ9UBF8 816 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 CDH22Q9UJ99 828 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 FRMPD4Q14CM0 1322 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 TBCAO75347 108 aaKnown RBP12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 POLR2EP19388 210 aaKnown RBP12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 EIF2AK2P19525 551 aaKnown RBP12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 SOX5P35711 763 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 CPOXP36551 454 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 NR4A2P43354 598 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 AP3M2P53677 418 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 TRAF2Q12933 501 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 PRKD1Q15139 912 aaPredicted RBP12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 RHOT2Q8IXI1 618 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 EXD1Q8NHP7 514 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 BMP2KQ9NSY1 1161 aaPredicted RBP12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 ERGIC3Q9Y282 383 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 AKAP12Q02952 1782 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 KRT18P05783 430 aaKnown RBP12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 IFNA8P32881 189 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 TUBA4AP68366 448 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 CTBSQ01459 385 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 CCDC58Q4VC31 144 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 TJAP1Q5JTD0 557 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 SLC27A3Q5K4L6 730 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 LDLRAP1Q5SW96 308 aa12.53□□□□□ -0.4
LIMCH1-213ENST00000511496 DPY19L2P1Q6NXN4 242 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms