RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SDE2Q6IQ49 451 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 ANO7Q6IWH7 933 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 SLC15A3Q8IY34 581 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 OSCP1Q8WVF1 389 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 SOCS4Q8WXH5 440 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 LENG8Q96PV6 779 aaPredicted RBP3.68□□□□□ -1.82
NUP54-208ENST00000508604 THAP7Q9BT49 309 aaPredicted RBP3.68□□□□□ -1.82
NUP54-208ENST00000508604 HIPK2Q9H2X6 1198 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 LMBRD1Q9NUN5 540 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 SERPINB13Q9UIV8 391 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 GABRQQ9UN88 632 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 PLEKHM1Q9Y4G2 1056 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 PCDHGA9Q9Y5G4 932 aaKnown RBP3.68□□□□□ -1.82
NUP54-208ENST00000508604 PCDHGA8Q9Y5G5 932 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 PCDHGA7Q9Y5G6 932 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 PCDHGA6Q9Y5G7 932 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 PCDHGA3Q9Y5H0 932 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 PSMD9O00233 223 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 CCND1P24385 295 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 HK3P52790 923 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 ID2Q02363 134 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 ERV3-1Q14264 604 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 TMEM63BQ5T3F8 832 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 DEPDC1Q5TB30 811 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 C9orf47Q6ZRZ4 202 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 SIRT6Q8N6T7 355 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 PNPOQ9NVS9 261 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 PCDHA1Q9Y5I3 950 aa3.68□□□□□ -1.82
NUP54-208ENST00000508604 ZMYM2Q9UBW7 1377 aa3.67□□□□□ -1.82
NUP54-208ENST00000508604 AP4M1O00189 453 aa3.67□□□□□ -1.82
NUP54-208ENST00000508604 AHSGP02765 367 aa3.67□□□□□ -1.82
NUP54-208ENST00000508604 TGFB3P10600 412 aa3.67□□□□□ -1.82
NUP54-208ENST00000508604 ME1P48163 572 aa3.67□□□□□ -1.82
NUP54-208ENST00000508604 HTR6P50406 440 aa3.67□□□□□ -1.82
NUP54-208ENST00000508604 DLK2Q6UY11 383 aa3.67□□□□□ -1.82
NUP54-208ENST00000508604 SIGLEC11Q96RL6 698 aa3.67□□□□□ -1.82
NUP54-208ENST00000508604 TRHDEQ9UKU6 1024 aa3.67□□□□□ -1.82
NUP54-208ENST00000508604 AMFRQ9UKV5 643 aa3.67□□□□□ -1.82
NUP54-208ENST00000508604 MYO1CO00159 1063 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 ERC2O15083 957 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 UNC5CO95185 931 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 GRPP07492 148 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 CYP2C9P11712 490 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 TYRP14679 529 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 HOXD9P28356 352 aaPredicted RBP3.66□□□□□ -1.82
NUP54-208ENST00000508604 VIPR2P41587 438 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 SUMO2P61956 95 aaKnown RBP3.66□□□□□ -1.82
NUP54-208ENST00000508604 EXOSC9Q06265 439 aaKnown RBP3.66□□□□□ -1.82
NUP54-208ENST00000508604 ITKQ08881 620 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 PCBP2Q15366 365 aaKnown RBP eCLIP3.66□□□□□ -1.822e-6■■■■■ 27.6
NUP54-208ENST00000508604 DAB2IPQ5VWQ8 1189 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 DENND2CQ68D51 928 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 CAND1Q86VP6 1230 aaKnown RBP3.66□□□□□ -1.82
NUP54-208ENST00000508604 PPP1R3BQ86XI6 285 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 DDX42Q86XP3 938 aaKnown RBP eCLIP3.66□□□□□ -1.82
NUP54-208ENST00000508604 ANKRD13BQ86YJ7 626 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 SFTPA1Q8IWL2 248 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 MMS19Q96T76 1030 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 SARS2Q9NP81 518 aaKnown RBP3.66□□□□□ -1.82
NUP54-208ENST00000508604 MAFFQ9ULX9 164 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 HS3ST3B1Q9Y662 390 aa3.66□□□□□ -1.82
NUP54-208ENST00000508604 TCRBV5S1A1TA0A578 114 aa3.65□□□□□ -1.82
NUP54-208ENST00000508604 H3BUI4 141 aa3.65□□□□□ -1.82
NUP54-208ENST00000508604 TULP3O75386 442 aa3.65□□□□□ -1.82
NUP54-208ENST00000508604 PSG1P11464 419 aa3.65□□□□□ -1.82
NUP54-208ENST00000508604 XRCC6P12956 609 aaKnown RBP eCLIP3.65□□□□□ -1.82
NUP54-208ENST00000508604 FPR3P25089 353 aa3.65□□□□□ -1.82
NUP54-208ENST00000508604 E2F1Q01094 437 aa3.65□□□□□ -1.82
NUP54-208ENST00000508604 KRT17Q04695 432 aa3.65□□□□□ -1.82
NUP54-208ENST00000508604 LEXMQ3ZCV2 418 aa3.65□□□□□ -1.82
NUP54-208ENST00000508604 C16orf71Q8IYS4 520 aaPredicted RBP3.65□□□□□ -1.82
NUP54-208ENST00000508604 ARFGAP1Q8N6T3 406 aa3.65□□□□□ -1.82
NUP54-208ENST00000508604 B4DGG1 531 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 PRSS44E7EML9 344 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 hCG_1984214I3L0E3 225 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 CES2O00748 559 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 PDCP20941 246 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 CDKN2AP42771 156 aaKnown RBP3.65□□□□□ -1.83
NUP54-208ENST00000508604 SOX8P57073 446 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 NANOS2P60321 138 aaKnown RBP3.65□□□□□ -1.83
NUP54-208ENST00000508604 MGAT5BQ3V5L5 792 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 RNASE12Q5GAN4 147 aaKnown RBP3.65□□□□□ -1.83
NUP54-208ENST00000508604 EMC10Q5UCC4 262 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 TMEM65Q6PI78 240 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 COLCA1Q6ZS62 124 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 BCDIN3DQ7Z5W3 292 aaKnown RBP3.65□□□□□ -1.83
NUP54-208ENST00000508604 IZUMO1Q8IYV9 350 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 FAM126AQ9BYI3 521 aaPredicted RBP3.65□□□□□ -1.83
NUP54-208ENST00000508604 FAM234AQ9H0X4 552 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 CNNM1Q9NRU3 951 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 PROCRQ9UNN8 238 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 MRPS17Q9Y2R5 130 aaKnown RBP3.65□□□□□ -1.83
NUP54-208ENST00000508604 TMX2Q9Y320 296 aa3.65□□□□□ -1.83
NUP54-208ENST00000508604 MT-CO3P00414 261 aa3.64□□□□□ -1.83
NUP54-208ENST00000508604 FGAP02671 866 aa3.64□□□□□ -1.83
NUP54-208ENST00000508604 CYP19A1P11511 503 aaPredicted RBP3.64□□□□□ -1.83
NUP54-208ENST00000508604 RPS13P62277 151 aaKnown RBP3.64□□□□□ -1.83
NUP54-208ENST00000508604 MYO1EQ12965 1108 aa3.64□□□□□ -1.83
NUP54-208ENST00000508604 DEF8Q6ZN54 512 aa3.64□□□□□ -1.83
NUP54-208ENST00000508604 RAB11FIP4Q86YS3 637 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms