RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 B3GNT5Q9BYG0 378 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 ELOVL4Q9GZR5 314 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 DPEP3Q9H4B8 488 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 HPS4Q9NQG7 708 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 DUS2Q9NX74 493 aaKnown RBP13.57□□□□□ -0.24
PTPRF-214ENST00000496043 FAM186AA6NE01 2351 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 C2orf78A6NCI8 922 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 CLDN5O00501 218 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 TRDMT1O14717 391 aaKnown RBP13.56□□□□□ -0.24
PTPRF-214ENST00000496043 TDGF1P13385 188 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 ARSAP15289 507 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 TCF3P15923 654 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 IFNAR2P48551 515 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 GALK1P51570 392 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 VAMP7P51809 220 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 USP46P62068 366 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 SATB1Q01826 763 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 ADAM9Q13443 819 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 CCINQ13939 588 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 MTF1Q14872 753 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 NFIL3Q16649 462 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 ZACNQ401N2 412 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 NUP93Q8N1F7 819 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 GUF1Q8N442 669 aaKnown RBP13.56□□□□□ -0.24
PTPRF-214ENST00000496043 CPA6Q8N4T0 437 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 SH3RF2Q8TEC5 729 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 OSCP1Q8WVF1 389 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 SECISBP2LQ93073 1101 aaKnown RBP13.56□□□□□ -0.24
PTPRF-214ENST00000496043 MED10Q9BTT4 135 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 GOLPH3LQ9H4A5 285 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 SMYD3Q9H7B4 428 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 ECT2Q9H8V3 914 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 GDPD2Q9HCC8 539 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 MAPK8IP1Q9UQF2 711 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 ATP8B3O60423 1300 aa13.56□□□□□ -0.24
PTPRF-214ENST00000496043 TICRRQ7Z2Z1 1910 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 ZNF840PA6NDX5 716 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 GOLGA6L4A6NEF3 574 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 OTOL1A6NHN0 477 aaPredicted RBP13.55□□□□□ -0.24
PTPRF-214ENST00000496043 ATG13O75143 517 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 RTN3O95197 1032 aaPredicted RBP13.55□□□□□ -0.24
PTPRF-214ENST00000496043 PAPSS2O95340 614 aaPredicted RBP13.55□□□□□ -0.24
PTPRF-214ENST00000496043 ABL1P00519 1130 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 KRT13P13646 458 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 NR2F2P24468 414 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 YWHAQP27348 245 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 PSMC2P35998 433 aaKnown RBP13.55□□□□□ -0.24
PTPRF-214ENST00000496043 TAF10Q12962 218 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 ZNF77Q15935 545 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 TMEM196Q5HYL7 178 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 WDR44Q5JSH3 913 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 INTS8Q75QN2 995 aaKnown RBP13.55□□□□□ -0.24
PTPRF-214ENST00000496043 KIAA2013Q8IYS2 634 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 CRYBG2Q8N1P7 616 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 DCLK2Q8N568 766 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 GPR161Q8N6U8 529 aaKnown RBP13.55□□□□□ -0.24
PTPRF-214ENST00000496043 RIN3Q8TB24 985 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 ATP2A3Q93084 1043 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 SLITRK1Q96PX8 696 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 ZNF518BQ9C0D4 1074 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 EPC1Q9H2F5 836 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 LINC00597Q9H2U6 94 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 NCDNQ9UBB6 729 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 RAB23Q9ULC3 237 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 ARHGAP26Q9UNA1 814 aa13.55□□□□□ -0.24
PTPRF-214ENST00000496043 AKAP3O75969 853 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 HLA-DRAP01903 254 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 TRIM21P19474 475 aaKnown RBP13.54□□□□□ -0.24
PTPRF-214ENST00000496043 DRD1P21728 446 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 CNR2P34972 360 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 GJA4P35212 333 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 RAP1GAPP47736 663 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 ID4P47928 161 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 CACNA2D1P54289 1103 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 NUCB2P80303 420 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 ENPEPQ07075 957 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 C1orf220Q5T0J3 134 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 SCARA5Q6ZMJ2 495 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 Q6ZS52 159 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 PAQR9Q6ZVX9 377 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 ACOT1Q86TX2 421 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 LONP2Q86WA8 852 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 UNC93AQ86WB7 457 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 FAM186BQ8IYM0 893 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 ELMO3Q96BJ8 720 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 KCNK16Q96T55 309 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 P2RY13Q9BPV8 354 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 RNF38Q9H0F5 515 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 SDCBP2Q9H190 292 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 COMMD8Q9NX08 183 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 CHORDC1Q9UHD1 332 aaPredicted RBP13.54□□□□□ -0.24
PTPRF-214ENST00000496043 WNT6Q9Y6F9 365 aa13.54□□□□□ -0.24
PTPRF-214ENST00000496043 USP34Q70CQ2 3546 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 COL4A2P08572 1712 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 NUP210Q8TEM1 1887 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-214ENST00000496043 CHURC1-FNTBB4DL54 471 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 K7ESF4 209 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 LEFTY2O00292 366 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 ASS1P00966 412 aaKnown RBP13.53□□□□□ -0.24
PTPRF-214ENST00000496043 HOXA6P31267 233 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms