RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 SYT1P21579 422 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 STAT6P42226 847 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 MYL7Q01449 175 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 FAM160A1Q05DH4 1040 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 NR1H3Q13133 447 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 GAB4Q2WGN9 574 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 UAP1L1Q3KQV9 507 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 PMS2CLQ68D20 193 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 FAM171BQ6P995 826 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 LIMS2Q7Z4I7 341 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 SPATA2LQ8IUW3 424 aaPredicted RBP14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 SFTPA1Q8IWL2 248 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 TMEM86AQ8N2M4 240 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 TOP6BLQ8N6T0 577 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 SH3RF2Q8TEC5 729 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 TPSD1Q9BZJ3 242 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 FOXD4L1Q9NU39 408 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 TMEM30AQ9NV96 361 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 INTS13Q9NVM9 706 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 TNRC6BQ9UPQ9 1833 aaKnown RBP14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 MYO18AQ92614 2054 aaKnown RBP14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 TRAV19A0A0A6YYK7 116 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 USP17L7P0C7H9 530 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 TMEM191BP0C7N4 346 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 CSRP1P21291 193 aaKnown RBP14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 DHPSP49366 369 aaPredicted RBP14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 CACNA2D1P54289 1103 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 RPL10AP62906 217 aaKnown RBP14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 RBP5P82980 135 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 MESP2Q0VG99 397 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 CFAP221Q4G0U5 840 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 ANO7Q6IWH7 933 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 TTC30AQ86WT1 665 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 GPD1LQ8N335 351 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 CACTINQ8WUQ7 758 aaKnown RBP14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 SYT15Q9BQS2 421 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 TMEM206Q9H813 350 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 MTMR6Q9Y217 621 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 PCDHB13Q9Y5F0 798 aa14.81□□□□□ -0.04
SQSTM1-208ENST00000485412 ASCC3Q8N3C0 2202 aaKnown RBP14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 PATE3B3GLJ2 98 aa14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 TOP3BO95985 862 aaKnown RBP14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 LDHAP00338 332 aaKnown RBP14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 PDGFRBP09619 1106 aa14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 BDNFP23560 247 aa14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 TXLNAP40222 546 aa14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 OPRD1P41143 372 aa14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 SEC13P55735 322 aa14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 CCDC73Q6ZRK6 1079 aa14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 DEFB124Q8NES8 71 aa14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 PIGKQ92643 395 aa14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 HPDLQ96IR7 371 aa14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 MRPL45Q9BRJ2 306 aaKnown RBP14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 SCNM1Q9BWG6 230 aa14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 WASF3Q9UPY6 502 aa14.8□□□□□ -0.04
SQSTM1-208ENST00000485412 NFATC1O95644 943 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 HOXB3P14651 431 aaPredicted RBP14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 HNRNPLP14866 589 aaKnown RBP eCLIP14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 BCKDHBP21953 392 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 PCSK1P29120 753 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 CASP1P29466 404 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 MYH10P35580 1976 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 PI4KAP42356 2102 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 MAGEA11P43364 429 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 LHX1P48742 406 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 SLC39A14Q15043 492 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 E2F4Q16254 413 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 C2orf27AQ580R0 203 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 KIAA1211LQ6NV74 962 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 FSIP1Q8NA03 581 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 USP33Q8TEY7 942 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 ZCCHC14Q8WYQ9 949 aaKnown RBP14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 ELMO3Q96BJ8 720 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 PCED1BQ96HM7 432 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 FUBP3Q96I24 572 aaKnown RBP eCLIP14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 CNOT6LQ96LI5 555 aaKnown RBP14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 TMEM121BQ9BXQ6 578 aaPredicted RBP14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 GZF1Q9H116 711 aaPredicted RBP14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 DPEP3Q9H4B8 488 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 UPF2Q9HAU5 1272 aaKnown RBP14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 HSPBP1Q9NZL4 362 aa14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 CIZ1Q9ULV3 898 aaPredicted RBP14.79□□□□□ -0.04
SQSTM1-208ENST00000485412 CDX4O14627 284 aaPredicted RBP14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 TGFB1I1O43294 461 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 ALDH1A2O94788 518 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 CST3P01034 146 aaPredicted RBP14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 CHRM1P11229 460 aaPredicted RBP14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 HDCP19113 662 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 IRX4P78413 519 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 CYP27A1Q02318 531 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 LMAN2Q12907 356 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 ALCAMQ13740 583 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 KCNB1Q14721 858 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 MDH1BQ5I0G3 518 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 RDH13Q8NBN7 331 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 GATA6Q92908 595 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 ANKRD36BP1Q96IX9 119 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 RNF38Q9H0F5 515 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 SLC32A1Q9H598 525 aa14.78□□□□□ -0.04
SQSTM1-208ENST00000485412 ZDHHC4Q9NPG8 344 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms