RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 STXBP5Q5T5C0 1151 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 ACAD11Q709F0 780 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 TRABD2AQ86V40 505 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 BTBD6Q96KE9 485 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 B3GALT6Q96L58 329 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 RBM15Q96T37 977 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS35-201ENST00000299138 COA1Q9GZY4 146 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 RUBCNLQ9H714 662 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 DMAC2Q9NW81 257 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 CNOT8Q9UFF9 292 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 ABT1Q9ULW3 272 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 SQORQ9Y6N5 450 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 CCDC78A2IDD5 438 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 H0YJX3 145 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 ALOX15BO15296 676 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 TBC1D4O60343 1298 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 FTLP02792 175 aaPredicted RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 GARTP22102 1010 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 CCNCP24863 283 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 MAGEA4P43358 317 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 ATN1P54259 1190 aaPredicted RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 GEMIN4P57678 1058 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 LGALS3BPQ08380 585 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 DCTN2Q13561 401 aaKnown RBP6.66□□□□□ -1.34
VPS35-201ENST00000299138 GIT2Q14161 759 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 HLFQ16534 295 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 IL17AQ16552 155 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 RABGAP1LQ5R372 815 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 IZUMO3Q5VZ72 239 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 SULT1C3Q6IMI6 304 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 TAS2R42Q7RTR8 314 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 SHC3Q92529 594 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 UPF1Q92900 1129 aaKnown RBP eCLIP6.66□□□□□ -1.342e-8■■■■■ 40.2
VPS35-201ENST00000299138 GMCL1Q96IK5 515 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 C7orf26Q96N11 449 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 C1orf21Q9H246 121 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 TMEM8AQ9HCN3 771 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 PADI4Q9UM07 663 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 SPATA31A5Q5VU36 1347 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 SPATA31A7Q8IWB4 1347 aa6.66□□□□□ -1.34
VPS35-201ENST00000299138 CCDC189A1A4V9 331 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 ACSL3O95573 720 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 C4AP0C0L4 1744 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 C4BP0C0L5 1744 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 ATF4P18848 351 aaPredicted RBP6.65□□□□□ -1.34
VPS35-201ENST00000299138 MSR1P21757 451 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 BTDP43251 543 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 RPS6KA3P51812 740 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 IFRD2Q12894 506 aaPredicted RBP6.65□□□□□ -1.34
VPS35-201ENST00000299138 KRR1Q13601 381 aaKnown RBP6.65□□□□□ -1.34
VPS35-201ENST00000299138 RFX6Q8HWS3 928 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 IFNLR1Q8IU57 520 aaPredicted RBP6.65□□□□□ -1.34
VPS35-201ENST00000299138 ZBTB18Q99592 522 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 ASPSCR1Q9BZE9 553 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 ADAM22Q9P0K1 906 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 MOSPD1Q9UJG1 213 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 PHTF1Q9UMS5 762 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 COQ4Q9Y3A0 265 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 LAMA4Q16363 1823 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 AGRPO00253 132 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 OPLAHO14841 1288 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 GUCA1CO95843 209 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 POLR2MP0CAP2 368 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 PDHBP11177 359 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 KCNA2P16389 499 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 TARSP26639 723 aaKnown RBP6.65□□□□□ -1.34
VPS35-201ENST00000299138 FLT3P36888 993 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 SPIDRQ14159 915 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 VPS72Q15906 364 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 ZNF568Q3ZCX4 644 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 USH1GQ495M9 461 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 KLHL12Q53G59 568 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 FAM45BPQ6NSW5 357 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 CLEC4FQ8N1N0 589 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 PYROXD1Q8WU10 500 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 GLMNQ92990 594 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 NKD2Q969F2 451 aaPredicted RBP6.65□□□□□ -1.34
VPS35-201ENST00000299138 VPS39Q96JC1 886 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 PPP1R36Q96LQ0 422 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 DEPDC7Q96QD5 511 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 GRHL1Q9NZI5 618 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 TFCP2L1Q9NZI6 479 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 MAFFQ9ULX9 164 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 NFASCO94856 1347 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 KRT20P35900 424 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 DSG1Q02413 1049 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 CBLBQ13191 982 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 PTPN21Q16825 1174 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 ZSWIM7Q19AV6 140 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 EIF2S3LQ2VIR3 472 aaKnown RBP6.65□□□□□ -1.34
VPS35-201ENST00000299138 SYTL3Q4VX76 610 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 ARMCX4Q5H9R4 360 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 DDI2Q5TDH0 399 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 SNX30Q5VWJ9 437 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 METTL21CQ5VZV1 264 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 EXOC3L1Q86VI1 746 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.65□□□□□ -1.34
VPS35-201ENST00000299138 GMCL1P1Q8NEA9 526 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 ANKRD49Q8WVL7 239 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 CSRNP1Q96S65 589 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms