RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Cyp4f17G3UW78 524 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Cdh8P97291 799 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Zfp512bQ6PHP4 879 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Ccnt2Q7TQK0 723 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Cyp2c50Q91X77 490 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Cyp4f16Q99N17 524 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Fip1l1Q9D824 581 aaKnown RBP16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Gtf2h1Q9DBA9 547 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Scyl3Q9DBQ7 735 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Phtf1Q9QZ09 761 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Gm379J3QQ19 296 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 EpoP07321 192 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 NfiaQ02780 532 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Aars2Q14CH7 980 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Klra3Q64329 266 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Frmd5Q6P5H6 517 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Gpr156Q6PCP7 798 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Gpr151Q7TSN6 422 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 TxlngQ8BHN1 524 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Ipo11Q8K2V6 975 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Slc39a3Q99K24 317 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Thg1lQ9CY52 298 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Phf2Q9WTU0 1096 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Gm3187M0QWW3 260 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Hoxb8P09632 243 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Ap2a2P17427 938 aaKnown RBP16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Ptpn11P35235 597 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Tpd52Q62393 224 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Stx19Q8R1Q0 292 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Sfmbt1Q9JMD1 863 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Itgb3O54890 787 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Epha3P29319 983 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Krt80Q0VBK2 452 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 HiraQ61666 1015 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Lsm8Q6ZWM4 96 aaKnown RBP16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Tmem161bQ8C2L6 487 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Cul2Q9D4H8 745 aa16.15■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Spata31d1dE9Q5W2 1247 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Barx2O08686 283 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 En2P09066 324 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 FechP22315 420 aaKnown RBP16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 PpargP37238 505 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Mif4gdQ3UBZ5 222 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Spout1Q3UHX9 385 aaKnown RBP16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pdp2Q504M2 532 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Tp53i13Q5F267 385 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Tcaf3Q6QR59 914 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Plppr4Q7TME0 766 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Krt75Q8BGZ7 551 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Phactr3Q8BYK5 558 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Mamdc2Q8CG85 686 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pcdhb1Q91Y08 818 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Cd68P31996 326 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Trim62Q80V85 475 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 HpdlQ8K248 371 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Olfr393Q8VGR6 312 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Arhgef26D3YYY8 869 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Top3aO70157 1003 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ksr1Q61097 873 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 TdrkhQ80VL1 560 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Tcirg1Q9JHF5 834 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Tspan3Q9QY33 253 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gm29554A0A087WNW4 188 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 1700031M16RikA0A087WSH0 82 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 R3hdm1E9Q9Q2 1135 aaKnown RBP16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 GclcP97494 637 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 CttnQ60598 546 aaKnown RBP16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Map2k2Q63932 401 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Xlr3bQ6P205 226 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Svs3bQ8BZH8 265 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Snap47Q8R570 413 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Nme5Q99MH5 211 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Zbed3Q9D0L1 228 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 PorcnQ9JJJ7 461 aa16.14■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 2610008E11RikG3X964 669 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Stam2O88811 523 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Hoxd10P28359 340 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pdcd2P46718 343 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ugt1a2P70691 533 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pbxip1Q3TVI8 727 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ugt1a1Q63886 535 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Atp6v1b1Q91YH6 513 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Stk33Q924X7 491 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 TrabdQ99JY4 376 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Smim10l2aA0A0B4J1F8 78 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Dhx35A2ACQ1 703 aaKnown RBP16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Atf6F6VAN0 656 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Mup5P11591 180 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Mgat3Q10470 538 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ankrd34bQ3UUF8 508 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Nfe2l2Q60795 597 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 SnrpaQ62189 287 aaKnown RBP16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Sez6lQ6P1D5 963 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Fam185aQ7TPD2 378 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Trim35Q8C006 501 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Wdr60Q8C761 999 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Cog4Q8R1U1 785 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Mageb3Q9D2H4 330 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gtf3c6Q9D8P7 227 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Slc5a4aQ9ET37 656 aa16.13■□□□□ 0.17
Retrieved 100 of 22,080 RNA–protein pairs in 18.9 ms