RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 DDX42Q86XP3 938 aaKnown RBP eCLIP6.76□□□□□ -1.33
CUX1-220ENST00000607092 SPATA2LQ8IUW3 424 aaPredicted RBP6.76□□□□□ -1.33
CUX1-220ENST00000607092 RPLP0P6Q8NHW5 317 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 CEP76Q8TAP6 659 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 GIPC2Q8TF65 315 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 POMGNT1Q8WZA1 660 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 LRRC3BQ96PB8 259 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 LPIN3Q9BQK8 851 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 REEP2Q9BRK0 252 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 MMTAG2Q9BU76 263 aaKnown RBP6.76□□□□□ -1.33
CUX1-220ENST00000607092 POLMQ9NP87 494 aaPredicted RBP6.76□□□□□ -1.33
CUX1-220ENST00000607092 ITGA11Q9UKX5 1188 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 ARHGAP26Q9UNA1 814 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 MAGED2Q9UNF1 606 aaPredicted RBP6.76□□□□□ -1.33
CUX1-220ENST00000607092 NEUROG3Q9Y4Z2 214 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 STYXL1Q9Y6J8 313 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 PDCD11Q14690 1871 aaKnown RBP6.76□□□□□ -1.33
CUX1-220ENST00000607092 MAST4O15021 2626 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 CACNA1EQ15878 2313 aa6.76□□□□□ -1.33
CUX1-220ENST00000607092 LNP1A1A4G5 178 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 PP2D1A8MPX8 630 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 UPK3BL1B0FP48 263 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 UPK3BL2E5RIL1 263 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 SOAT2O75908 522 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 ADH1CP00326 375 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 EGFP01133 1207 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 NFICP08651 508 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 GAP43P17677 238 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 HDCP19113 662 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 ANXA13P27216 316 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 TXLNAP40222 546 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 PXNP49023 591 aaPredicted RBP6.75□□□□□ -1.33
CUX1-220ENST00000607092 TOB1P50616 345 aaPredicted RBP6.75□□□□□ -1.33
CUX1-220ENST00000607092 RBP5P82980 135 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 FOXC1Q12948 553 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 USP4Q13107 963 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 E2F5Q15329 346 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 ZNF77Q15935 545 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 ARSHQ5FYA8 562 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 INTS6LQ5JSJ4 861 aaKnown RBP6.75□□□□□ -1.33
CUX1-220ENST00000607092 EOGTQ5NDL2 527 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 SH3PXD2AQ5TCZ1 1133 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 WSCD1Q658N2 575 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 TXNDC8Q6A555 127 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 SLC36A4Q6YBV0 504 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 STXBP4Q6ZWJ1 553 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 KCNK18Q7Z418 384 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 RASSF3Q86WH2 238 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 SYT12Q8IV01 421 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 HDDC3Q8N4P3 179 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 TTC9BQ8N6N2 239 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 TOP6BLQ8N6T0 577 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 WHAMMQ8TF30 809 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 LARP4BQ92615 738 aaKnown RBP6.75□□□□□ -1.33
CUX1-220ENST00000607092 OTUB2Q96DC9 234 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 SPATA17Q96L03 361 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 PNMA5Q96PV4 448 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 HHIPQ96QV1 700 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 ADAM33Q9BZ11 813 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 SMG9Q9H0W8 520 aaKnown RBP6.75□□□□□ -1.33
CUX1-220ENST00000607092 ZHX3Q9H4I2 956 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 TRPC7Q9HCX4 862 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 GDAP2Q9NXN4 497 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 TRPM5Q9NZQ8 1165 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 TBC1D14Q9P2M4 693 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 CCDC39Q9UFE4 941 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 MMP17Q9ULZ9 603 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 CCL26Q9Y258 94 aa6.75□□□□□ -1.33
CUX1-220ENST00000607092 PPEF2O14830 753 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 AP5Z1O43299 807 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 DTNBO60941 627 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 APODP05090 189 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 FAM163BP0C2L3 166 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 TMEM191BP0C7N4 346 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 TRIM21P19474 475 aaKnown RBP6.74□□□□□ -1.33
CUX1-220ENST00000607092 GARTP22102 1010 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 GRIA2P42262 883 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 DHPSP49366 369 aaPredicted RBP6.74□□□□□ -1.33
CUX1-220ENST00000607092 ACOT2P49753 483 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 GUCY2FP51841 1108 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 TFAMQ00059 246 aaKnown RBP6.74□□□□□ -1.33
CUX1-220ENST00000607092 ACAP1Q15027 740 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 CCDC6Q16204 474 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 CRY1Q16526 586 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 EML3Q32P44 896 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 WDR44Q5JSH3 913 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 BTBD8Q5XKL5 378 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 TRIM68Q6AZZ1 485 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 ANO7Q6IWH7 933 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 PKN3Q6P5Z2 889 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 BRAPQ7Z569 592 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 TMEM150AQ86TG1 271 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 BRSK2Q8IWQ3 736 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 PARP9Q8IXQ6 854 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 EFCAB13Q8IY85 973 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 PDCL2Q8N4E4 241 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 PDZD8Q8NEN9 1154 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 SH3RF2Q8TEC5 729 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 USP33Q8TEY7 942 aa6.74□□□□□ -1.33
CUX1-220ENST00000607092 RAD54LQ92698 747 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms