RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CNR2P34972 360 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 EHHADHQ08426 723 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 CUL4BQ13620 913 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 PUM1Q14671 1186 aaKnown RBP eCLIP10.47□□□□□ -0.73
VRK3-216ENST00000599342 MTF1Q14872 753 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 PDGFRLQ15198 375 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 LPAL2Q16609 132 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 KNOP1Q1ED39 458 aaKnown RBP10.47□□□□□ -0.73
VRK3-216ENST00000599342 BMT2Q1RMZ1 405 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 WDR44Q5JSH3 913 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 LAIR1Q6GTX8 287 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 DENND5BQ6ZUT9 1274 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 DGLUCYQ7Z3D6 616 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 LIMS2Q7Z4I7 341 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 LONP2Q86WA8 852 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 C12orf56Q8IXR9 622 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 CPA6Q8N4T0 437 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 SPRYD3Q8NCJ5 442 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 OR6B3Q8NGW1 331 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 GOLGA5Q8TBA6 731 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 SYAP1Q96A49 352 aaPredicted RBP10.47□□□□□ -0.73
VRK3-216ENST00000599342 PCED1BQ96HM7 432 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 CEP295NLQ96MC4 621 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 CRTAC1Q9NQ79 661 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 HPS4Q9NQG7 708 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 EXOC1Q9NV70 894 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 USP18Q9UMW8 372 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 PTPRZ1P23471 2315 aaPredicted RBP10.46□□□□□ -0.73
VRK3-216ENST00000599342 FAM186AA6NE01 2351 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 CHURC1-FNTBB4DL54 471 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 ATG13O75143 517 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 TACC1O75410 805 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 CST3P01034 146 aaPredicted RBP10.46□□□□□ -0.73
VRK3-216ENST00000599342 SLFN14P0C7P3 912 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 ARSAP15289 507 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 SDHBP21912 280 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 ATICP31939 592 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 GNL1P36915 607 aaPredicted RBP10.46□□□□□ -0.73
VRK3-216ENST00000599342 IFNAR2P48551 515 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 FNTBP49356 437 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 LMNB2Q03252 620 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 DNM1Q05193 864 aaKnown RBP10.46□□□□□ -0.73
VRK3-216ENST00000599342 USP4Q13107 963 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 BIRC3Q13489 604 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 PKP1Q13835 747 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 SIM2Q14190 667 aaPredicted RBP10.46□□□□□ -0.73
VRK3-216ENST00000599342 ZNF77Q15935 545 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 WDR72Q3MJ13 1102 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 TMEM196Q5HYL7 178 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 MDH1BQ5I0G3 518 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 HEATR6Q6AI08 1181 aaKnown RBP10.46□□□□□ -0.73
VRK3-216ENST00000599342 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.46□□□□□ -0.73
VRK3-216ENST00000599342 GRAMD1CQ8IYS0 662 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 ARL14EPQ8N8R7 260 aaPredicted RBP10.46□□□□□ -0.73
VRK3-216ENST00000599342 MYCBPAPQ8TBZ2 947 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 ATP2A3Q93084 1043 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 SPATA17Q96L03 361 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 MRPL45Q9BRJ2 306 aaKnown RBP10.46□□□□□ -0.73
VRK3-216ENST00000599342 DUS2Q9NX74 493 aaKnown RBP10.46□□□□□ -0.73
VRK3-216ENST00000599342 TRPM5Q9NZQ8 1165 aa10.46□□□□□ -0.73
VRK3-216ENST00000599342 NXF1Q9UBU9 619 aaKnown RBP10.46□□□□□ -0.73
VRK3-216ENST00000599342 OBSL1O75147 1896 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 KIF26AQ9ULI4 1882 aaPredicted RBP10.45□□□□□ -0.74
VRK3-216ENST00000599342 C2orf78A6NCI8 922 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 A8MXQ7 604 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 K7ESF4 209 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 TRDMT1O14717 391 aaKnown RBP10.45□□□□□ -0.74
VRK3-216ENST00000599342 STAU1O95793 577 aaKnown RBP10.45□□□□□ -0.74
VRK3-216ENST00000599342 FAM163BP0C2L3 166 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 PFKLP17858 780 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 HDCP19113 662 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 DRD1P21728 446 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 PPP3CCP48454 512 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 AP3M2P53677 418 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 DMWDQ09019 674 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 NR1H3Q13133 447 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 RSPO4Q2I0M5 234 aaPredicted RBP10.45□□□□□ -0.74
VRK3-216ENST00000599342 ZNF699Q32M78 642 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 CEP68Q76N32 757 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 RIN3Q8TB24 985 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 SH3RF2Q8TEC5 729 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 OSCP1Q8WVF1 389 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 SLC22A12Q96S37 553 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 CYP2S1Q96SQ9 504 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 P2RY13Q9BPV8 354 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 ELOVL4Q9GZR5 314 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 ECT2Q9H8V3 914 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 SERTAD1Q9UHV2 236 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 RCOR1Q9UKL0 485 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 CDV3Q9UKY7 258 aaKnown RBP10.45□□□□□ -0.74
VRK3-216ENST00000599342 SLC8A2Q9UPR5 921 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 WNT6Q9Y6F9 365 aa10.45□□□□□ -0.74
VRK3-216ENST00000599342 ATP8B3O60423 1300 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 OTOL1A6NHN0 477 aaPredicted RBP10.44□□□□□ -0.74
VRK3-216ENST00000599342 PRR5-ARHGAP8B1AHC4 643 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 F8VP50 259 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 ACTN4O43707 911 aaKnown RBP10.44□□□□□ -0.74
VRK3-216ENST00000599342 RNF40O75150 1001 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 ABL1P00519 1130 aa10.44□□□□□ -0.74
VRK3-216ENST00000599342 EGFP01133 1207 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms