RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 RAD23BP54727 409 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 MFAP3P55082 362 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 UBXN1Q04323 297 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 MTMR3Q13615 1198 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 TMC5Q6UXY8 1006 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 CYP26C1Q6V0L0 522 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 GPR149Q86SP6 731 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 SLC4A11Q8NBS3 891 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 FEZF2Q8TBJ5 459 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 TMEM176AQ96HP8 235 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 ERGIC2Q96RQ1 377 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 APOL5Q9BWW9 433 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 LSM14BQ9BX40 385 aaKnown RBP19.33■□□□□ 0.68
LIG1-216ENST00000598938 B3GNT5Q9BYG0 378 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 PRKD2Q9BZL6 878 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 DNAI2Q9GZS0 605 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 SORCS3Q9UPU3 1222 aa19.33■□□□□ 0.68
LIG1-216ENST00000598938 TRIM21P19474 475 aaKnown RBP19.32■□□□□ 0.68
LIG1-216ENST00000598938 MAGEA11P43364 429 aa19.32■□□□□ 0.68
LIG1-216ENST00000598938 FANCCQ00597 558 aa19.32■□□□□ 0.68
LIG1-216ENST00000598938 CYP27A1Q02318 531 aa19.32■□□□□ 0.68
LIG1-216ENST00000598938 SYCP1Q15431 976 aa19.32■□□□□ 0.68
LIG1-216ENST00000598938 ZNF394Q53GI3 561 aa19.32■□□□□ 0.68
LIG1-216ENST00000598938 KLHDC7AQ5VTJ3 777 aa19.32■□□□□ 0.68
LIG1-216ENST00000598938 SMYD5Q6GMV2 418 aa19.32■□□□□ 0.68
LIG1-216ENST00000598938 NAP1L5Q96NT1 182 aaPredicted RBP19.32■□□□□ 0.68
LIG1-216ENST00000598938 AJAP1Q9UKB5 411 aaPredicted RBP19.32■□□□□ 0.68
LIG1-216ENST00000598938 CNTN6Q9UQ52 1028 aa19.32■□□□□ 0.68
LIG1-216ENST00000598938 MYO10Q9HD67 2058 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 CCL16O15467 120 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 TEX33O43247 280 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 SOAT2O75908 522 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 SERPINC1P01008 464 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 LRG1P02750 347 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 CYP2F1P24903 491 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 KLK7P49862 253 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 ZNF132P52740 706 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 TWF1Q12792 350 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 PLD1Q13393 1074 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 MGAT5BQ3V5L5 792 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 FILIP1LQ4L180 1135 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 CES5AQ6NT32 575 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 TMEM270Q6UE05 265 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 VSTM1Q6UX27 236 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 PAQR9Q6ZVX9 377 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 C12orf29Q8N999 325 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 RNF214Q8ND24 703 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 SEPT5Q99719 369 aaPredicted RBP19.31■□□□□ 0.68
LIG1-216ENST00000598938 NAA15Q9BXJ9 866 aaKnown RBP19.31■□□□□ 0.68
LIG1-216ENST00000598938 ZNF518BQ9C0D4 1074 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 GANQ9H2C0 597 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 DNAJC12Q9UKB3 198 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 PCDHB4Q9Y5E5 795 aa19.31■□□□□ 0.68
LIG1-216ENST00000598938 FAM186AA6NE01 2351 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 RIF1Q5UIP0 2472 aaKnown RBP19.3■□□□□ 0.68
LIG1-216ENST00000598938 PTPRDP23468 1912 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 MYO15AQ9UKN7 3530 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 CLDN5O00501 218 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 XYLBO75191 536 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 NOL4O94818 638 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 PAEPP09466 180 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 CCDC130P13994 396 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 UCHL3P15374 230 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 ATF6P18850 670 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 RFX1P22670 979 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 BDNFP23560 247 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 NBL1P41271 181 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 ALDH1A3P47895 512 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 IQCEQ6IPM2 695 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 FAM35AQ86V20 835 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 FUKQ8N0W3 1084 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 SHC3Q92529 594 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 SMG7Q92540 1137 aaKnown RBP19.3■□□□□ 0.68
LIG1-216ENST00000598938 FAM49BQ9NUQ9 324 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 CEP72Q9P209 647 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 CDH22Q9UJ99 828 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 FHOD1Q9Y613 1164 aa19.3■□□□□ 0.68
LIG1-216ENST00000598938 PTPRZ1P23471 2315 aaPredicted RBP19.3■□□□□ 0.68
LIG1-216ENST00000598938 ATP8B3O60423 1300 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 DENND4AQ7Z401 1863 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 H0Y858 1186 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 RNF225M0QZC1 329 aaPredicted RBP19.29■□□□□ 0.68
LIG1-216ENST00000598938 MTHFRP42898 656 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 RPL10AP62906 217 aaKnown RBP19.29■□□□□ 0.68
LIG1-216ENST00000598938 NR1I3Q14994 352 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 ARHGAP44Q17R89 818 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 RBBP8NLQ8NC74 664 aaPredicted RBP19.29■□□□□ 0.68
LIG1-216ENST00000598938 SLC2A14Q8TDB8 520 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 CYFIP2Q96F07 1278 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 HEXIM2Q96MH2 286 aaKnown RBP19.29■□□□□ 0.68
LIG1-216ENST00000598938 HNRNPABQ99729 332 aaKnown RBP19.29■□□□□ 0.68
LIG1-216ENST00000598938 ANP32EQ9BTT0 268 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 MED10Q9BTT4 135 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 TMEM30AQ9NV96 361 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 DAAM1Q9Y4D1 1078 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 ASB3Q9Y575 518 aa19.29■□□□□ 0.68
LIG1-216ENST00000598938 A0A1W2PQC6 194 aa19.28■□□□□ 0.68
LIG1-216ENST00000598938 EPHB6O15197 1021 aa19.28■□□□□ 0.68
LIG1-216ENST00000598938 GPR15P49685 360 aa19.28■□□□□ 0.68
LIG1-216ENST00000598938 CACNA2D1P54289 1103 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms