RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 PREX1Q8TCU6 1659 aa5.97□□□□□ -1.45
SMAD4-216ENST00000593223 MAST3O60307 1309 aa5.97□□□□□ -1.45
SMAD4-216ENST00000593223 CUX1P39880 1505 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 ARAP3Q8WWN8 1544 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 A0A087WWL8 130 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 A0A087X1B8 175 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 DCLK1O15075 740 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 PRC1O43663 620 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 KRT18P05783 430 aaKnown RBP5.96□□□□□ -1.46
SMAD4-216ENST00000593223 CHRM2P08172 466 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 MRPS35P82673 323 aaKnown RBP5.96□□□□□ -1.46
SMAD4-216ENST00000593223 FMO1Q01740 532 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 ITIH3Q06033 890 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 SEMA5AQ13591 1074 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 HLTFQ14527 1009 aaKnown RBP eCLIP5.96□□□□□ -1.46
SMAD4-216ENST00000593223 SFRP4Q6FHJ7 346 aaPredicted RBP5.96□□□□□ -1.46
SMAD4-216ENST00000593223 VWA1Q6PCB0 445 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 MYCBPAPQ8TBZ2 947 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 RAPGEF4Q8WZA2 1011 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 FAM136AQ96C01 138 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 PGBD1Q96JS3 809 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 NELL2Q99435 816 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 DPH1Q9BZG8 443 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 ZNF518BQ9C0D4 1074 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 NUP62CLQ9H1M0 184 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 TOR3AQ9H497 397 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 AFF4Q9UHB7 1163 aaKnown RBP5.96□□□□□ -1.46
SMAD4-216ENST00000593223 SNX13Q9Y5W8 968 aa5.96□□□□□ -1.46
SMAD4-216ENST00000593223 EPN1Q9Y6I3 576 aaPredicted RBP5.96□□□□□ -1.46
SMAD4-216ENST00000593223 WDR33Q9C0J8 1336 aaKnown RBP5.96□□□□□ -1.46
SMAD4-216ENST00000593223 TMEM233B4DJY2 109 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 CAND2O75155 1236 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 GNALP38405 381 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 FOLR3P41439 243 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 HMGA2P52926 109 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 WNT3P56703 355 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 NXPH1P58417 271 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 C3orf38Q5JPI3 329 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 ARHGAP40Q5TG30 622 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 VPS53Q5VIR6 699 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.95□□□□□ -1.46
SMAD4-216ENST00000593223 ACTRT2Q8TDY3 377 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 MORC4Q8TE76 937 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 CHFRQ96EP1 664 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 PTDSS2Q9BVG9 487 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 SARGQ9BW04 601 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 AMBRA1Q9C0C7 1298 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 SMURF2Q9HAU4 748 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 A1CFQ9NQ94 594 aaKnown RBP5.95□□□□□ -1.46
SMAD4-216ENST00000593223 STK32BQ9NY57 414 aa5.95□□□□□ -1.46
SMAD4-216ENST00000593223 ABCA10Q8WWZ4 1543 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 RASSF9O75901 435 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 LRPAP1P30533 357 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 PLA2G5P39877 138 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 MPLP40238 635 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 HNRNPMP52272 730 aaKnown RBP eCLIP5.94□□□□□ -1.46
SMAD4-216ENST00000593223 FOXI1Q12951 378 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 E2F2Q14209 437 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 SAFBQ15424 915 aaKnown RBP eCLIP5.94□□□□□ -1.46
SMAD4-216ENST00000593223 ERCC6LQ2NKX8 1250 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 MGAT5BQ3V5L5 792 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 ICE2Q659A1 982 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 KAZNQ674X7 775 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 TFAP2BQ92481 460 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 STK31Q9BXU1 1019 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 IKZF4Q9H2S9 585 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 DDX21Q9NR30 783 aaKnown RBP eCLIP5.94□□□□□ -1.46
SMAD4-216ENST00000593223 SERTAD3Q9UJW9 196 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 HDAC9Q9UKV0 1011 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 RUSC2Q8N2Y8 1516 aa5.94□□□□□ -1.46
SMAD4-216ENST00000593223 UHRF1BP1Q6BDS2 1440 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 TRIM43BA6NCK2 446 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 RHPN2P1A8MT19 583 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 hCG_1984214I3L0E3 225 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 PPM1DO15297 605 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 PROM1O43490 865 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 ORC4O43929 436 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 CXCR5P32302 372 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 RPS16P62249 146 aaKnown RBP5.93□□□□□ -1.46
SMAD4-216ENST00000593223 EIF2B5Q13144 721 aaKnown RBP5.93□□□□□ -1.46
SMAD4-216ENST00000593223 PLA1AQ53H76 456 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 DCAF12L1Q5VU92 463 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 RGS7BPQ6MZT1 257 aaPredicted RBP5.93□□□□□ -1.46
SMAD4-216ENST00000593223 ZNF280BQ86YH2 543 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 SLC9A6Q92581 669 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 MAML1Q92585 1016 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 SPSB4Q96A44 273 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 FKBP10Q96AY3 582 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 TRIM43Q96BQ3 446 aaPredicted RBP5.93□□□□□ -1.46
SMAD4-216ENST00000593223 NMD3Q96D46 503 aaKnown RBP5.93□□□□□ -1.46
SMAD4-216ENST00000593223 PKNOX2Q96KN3 472 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 PCGF6Q9BYE7 350 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 UBA5Q9GZZ9 404 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 CORO2BQ9UQ03 480 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 MRPS17Q9Y2R5 130 aaKnown RBP5.93□□□□□ -1.46
SMAD4-216ENST00000593223 DMRT1Q9Y5R6 373 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 SETBP1Q9Y6X0 1596 aa5.93□□□□□ -1.46
SMAD4-216ENST00000593223 PYCARD-AS1I3L0S3 204 aa5.92□□□□□ -1.46
SMAD4-216ENST00000593223 MPPED1O15442 326 aa5.92□□□□□ -1.46
SMAD4-216ENST00000593223 CENPBP07199 599 aaPredicted RBP5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms