RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 PDZD4Q76G19 769 aaPredicted RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 PRRT2Q7Z6L0 340 aaPredicted RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 CTU1Q7Z7A3 348 aaKnown RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 NOSTRINQ8IVI9 506 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 LCORLQ8N3X6 602 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 CLRN3Q8NCR9 226 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 SLC30A5Q8TAD4 765 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 RILPL2Q969X0 211 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 TOE1Q96GM8 510 aaKnown RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 RSRC1Q96IZ7 334 aaKnown RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 CCDC17Q96LX7 622 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 TEKT5Q96M29 485 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 RMDN3Q96TC7 470 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 PARK7Q99497 189 aaKnown RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 ACO2Q99798 780 aaKnown RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 PTPN18Q99952 460 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 LMAN2LQ9H0V9 348 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 PLEKHA5Q9HAU0 1116 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 KCNH7Q9NS40 1196 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 ANKEF1Q9NU02 776 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 OXSMQ9NWU1 459 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 RTEL1Q9NZ71 1219 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 GPRC5BQ9NZH0 403 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 ARPP21Q9UBL0 812 aaPredicted RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 PCDHGB6Q9Y5F9 930 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 NAV1Q8NEY1 1877 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 PTPRFP10586 1907 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 KIAA0100Q14667 2235 aaKnown RBP6.77□□□□□ -1.33
VPS53-212ENST00000572259 A0A087WV62 115 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 PRAMEF25A6NGN4 478 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 TLR2O60603 784 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 PEX10O60683 326 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 GALNSP34059 522 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 PLCD1P51178 756 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 KIF11P52732 1056 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 NAP1L1P55209 391 aaKnown RBP6.77□□□□□ -1.33
VPS53-212ENST00000572259 BACE1P56817 501 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 CRHR2Q13324 411 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 TARBP2Q15633 366 aaKnown RBP6.77□□□□□ -1.33
VPS53-212ENST00000572259 MCMDC2Q4G0Z9 681 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 PAN2Q504Q3 1202 aaKnown RBP6.77□□□□□ -1.33
VPS53-212ENST00000572259 SBK1Q52WX2 424 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 FKBP15Q5T1M5 1219 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 C12orf60Q5U649 245 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 OVCH2Q7RTZ1 564 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 ZC3H18Q86VM9 953 aaKnown RBP6.77□□□□□ -1.33
VPS53-212ENST00000572259 FAM126BQ8IXS8 530 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 ZNF444Q8N0Y2 327 aaPredicted RBP6.77□□□□□ -1.33
VPS53-212ENST00000572259 OTUD7AQ8TE49 926 aaPredicted RBP6.77□□□□□ -1.33
VPS53-212ENST00000572259 AFAP1L1Q8TED9 768 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 SMCR8Q8TEV9 937 aaPredicted RBP6.77□□□□□ -1.33
VPS53-212ENST00000572259 DIS3LQ8TF46 1054 aaKnown RBP6.77□□□□□ -1.33
VPS53-212ENST00000572259 HPS3Q969F9 1004 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 ATP6V1E2Q96A05 226 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 TTLL2Q9BWV7 592 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 NAPBQ9H115 298 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 SH2D4AQ9H788 454 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 CD248Q9HCU0 757 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 DTLQ9NZJ0 730 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 POLHQ9Y253 713 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 TELO2Q9Y4R8 837 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 DOCK3Q8IZD9 2030 aa6.77□□□□□ -1.33
VPS53-212ENST00000572259 SALL3Q9BXA9 1300 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 PHIPQ8WWQ0 1821 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 FAM90A27PA6NNH2 459 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 SMTNL1A8MU46 457 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 GOLGA6L6A8MZA4 724 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 PRKAB2O43741 272 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 BUB1BO60566 1050 aaPredicted RBP6.76□□□□□ -1.33
VPS53-212ENST00000572259 ARIH2O95376 493 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 GH2P01242 217 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 FAHP16930 419 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 PFKLP17858 780 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 GCLCP48506 637 aaPredicted RBP6.76□□□□□ -1.33
VPS53-212ENST00000572259 HMGCS2P54868 508 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 IRX3P78415 501 aaPredicted RBP6.76□□□□□ -1.33
VPS53-212ENST00000572259 PLIN5Q00G26 463 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 GABPAQ06546 454 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 LRRC32Q14392 662 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 PSMD6Q15008 389 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 TAF12Q16514 161 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 CCNG2Q16589 344 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 CTR9Q6PD62 1173 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 LILRA6Q6PI73 481 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 CD300LDQ6UXZ3 194 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 DSTYKQ6XUX3 929 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 TMEM179Q6ZVK1 233 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 LCA5Q86VQ0 697 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 C7orf31Q8N865 590 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 RUFY2Q8WXA3 655 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 ZMAT2Q96NC0 199 aaKnown RBP6.76□□□□□ -1.33
VPS53-212ENST00000572259 NUP62CLQ9H1M0 184 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 CERS4Q9HA82 394 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 ACSS2Q9NR19 701 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 DIAPH3Q9NSV4 1193 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 SPTLC3Q9NUV7 552 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 NSMCE4AQ9NXX6 385 aa6.76□□□□□ -1.33
VPS53-212ENST00000572259 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS53-212ENST00000572259 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.76□□□□□ -1.33
VPS53-212ENST00000572259 TMCC3Q9ULS5 477 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms