RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ATP8B3O60423 1300 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 SPDYE4A6NLX3 237 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 ZMYND10O75800 440 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 TPM3P06753 285 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 WEE2P0C1S8 567 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 ATP1A3P13637 1013 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 CDH8P55286 799 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 SLC39A12Q504Y0 691 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 APTXQ7Z2E3 356 aaKnown RBP21.9■■□□□ 1.1
VPS53-210ENST00000571456 B3GALNT2Q8NCR0 500 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 ERGIC2Q96RQ1 377 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 PKMYT1Q99640 499 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 CRACR2AQ9BSW2 395 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 SDCBP2Q9H190 292 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 KIAA1257Q9ULG3 409 aa21.9■■□□□ 1.1
VPS53-210ENST00000571456 USP24Q9UPU5 2620 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 MTMR11A4FU01 709 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 PRRG1O14668 218 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 LRRN2O75325 713 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 SERPINC1P01008 464 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 PTPN1P18031 435 aaKnown RBP21.89■■□□□ 1.09
VPS53-210ENST00000571456 LMO2P25791 158 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 MAGEA11P43364 429 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 NDST1P52848 882 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 UBXN1Q04323 297 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 ADCY1Q08828 1119 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 RNF19BQ6ZMZ0 732 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 USTQ9Y2C2 406 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 R4GN57 208 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 ATRXP46100 2492 aa21.89■■□□□ 1.09
VPS53-210ENST00000571456 PTPRDP23468 1912 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 A0A1B0GTH6 734 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 XYLBO75191 536 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 C8AP07357 584 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 PDGFRBP09619 1106 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 SLC9A1P19634 815 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 RAP1GAPP47736 663 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 LRMPQ12912 555 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 PPM1LQ5SGD2 360 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 PHLDB3Q6NSJ2 640 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 VSTM1Q6UX27 236 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 SPATA2LQ8IUW3 424 aaPredicted RBP21.88■■□□□ 1.09
VPS53-210ENST00000571456 ELOVL4Q9GZR5 314 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 CYP4F11Q9HBI6 524 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 UBE2TQ9NPD8 197 aaPredicted RBP21.88■■□□□ 1.09
VPS53-210ENST00000571456 RTN4Q9NQC3 1192 aaKnown RBP21.88■■□□□ 1.09
VPS53-210ENST00000571456 ASB3Q9Y575 518 aa21.88■■□□□ 1.09
VPS53-210ENST00000571456 LRG1P02750 347 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 PAEPP09466 180 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 OR4Q2P0C623 313 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 CD58P19256 250 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 ACAT1P24752 427 aaKnown RBP21.87■■□□□ 1.09
VPS53-210ENST00000571456 LRRTM3Q86VH5 581 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 ELMOD1Q8N336 334 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 UBR7Q8N806 425 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 RUBCNQ92622 972 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 CRTAC1Q9NQ79 661 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.87■■□□□ 1.094e-6■■■■■ 72.1
VPS53-210ENST00000571456 GTF3C4Q9UKN8 822 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 CNTN6Q9UQ52 1028 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 INSL5Q9Y5Q6 135 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 CACNA1IQ9P0X4 2223 aa21.87■■□□□ 1.09
VPS53-210ENST00000571456 DENND4AQ7Z401 1863 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 A0A1W2PQC6 194 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 MYBPHLA2RUH7 354 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 ALDH1A3P47895 512 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 RPL10AP62906 217 aaKnown RBP21.86■■□□□ 1.09
VPS53-210ENST00000571456 FANCCQ00597 558 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 KCNMA1Q12791 1236 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 RSPO4Q2I0M5 234 aaPredicted RBP21.86■■□□□ 1.09
VPS53-210ENST00000571456 FMNL3Q8IVF7 1028 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 LEMD2Q8NC56 503 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 SLC7A14Q8TBB6 771 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 TMEM176AQ96HP8 235 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 TMEM209Q96SK2 561 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 ARID3AQ99856 593 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 PRKD2Q9BZL6 878 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 FBXL21Q9UKT6 434 aa21.86■■□□□ 1.09
VPS53-210ENST00000571456 CBFA2T2O43439 604 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 HAPLN1P10915 354 aaPredicted RBP21.85■■□□□ 1.09
VPS53-210ENST00000571456 PSMC1P62191 440 aaKnown RBP21.85■■□□□ 1.09
VPS53-210ENST00000571456 DUSP4Q13115 394 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 TDGQ13569 410 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 STILQ15468 1287 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 ATAT1Q5SQI0 421 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 RARS2Q5T160 578 aaKnown RBP21.85■■□□□ 1.09
VPS53-210ENST00000571456 KLHDC7AQ5VTJ3 777 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 RRAGAQ7L523 313 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 ITIH5Q86UX2 942 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 ARHGEF19Q8IW93 802 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 SIX5Q8N196 739 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 WHAMMQ8TF30 809 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 MYLPFQ96A32 169 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 IQCDQ96DY2 449 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 PCED1BQ96HM7 432 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 PGLYRP2Q96PD5 576 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 SIX2Q9NPC8 291 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 ABI2Q9NYB9 513 aaPredicted RBP21.85■■□□□ 1.09
VPS53-210ENST00000571456 EHD2Q9NZN4 543 aa21.85■■□□□ 1.09
VPS53-210ENST00000571456 TRIM66O15016 1216 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms