RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 PRKCIP41743 596 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 RPL34P49207 117 aaKnown RBP9.86□□□□□ -0.83
VPS35-211ENST00000569950 USP46P62068 366 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 CNGA2Q16280 664 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 NFE2Q16621 373 aaPredicted RBP9.86□□□□□ -0.83
VPS35-211ENST00000569950 SDHAF4Q5VUM1 108 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 ANKRD54Q6NXT1 300 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 DENND1BQ6P3S1 775 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 LCLAT1Q6UWP7 414 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 TMEM150AQ86TG1 271 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 DCP1BQ8IZD4 617 aaKnown RBP9.86□□□□□ -0.83
VPS35-211ENST00000569950 C12orf76Q8N812 135 aaPredicted RBP9.86□□□□□ -0.83
VPS35-211ENST00000569950 TC2NQ8N9U0 490 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 CMASQ8NFW8 434 aaPredicted RBP9.86□□□□□ -0.83
VPS35-211ENST00000569950 SLC7A14Q8TBB6 771 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 SPPL2BQ8TCT7 592 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 C2orf15Q8WU43 125 aaKnown RBP9.86□□□□□ -0.83
VPS35-211ENST00000569950 HDAC7Q8WUI4 952 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 PABPC5Q96DU9 382 aaKnown RBP9.86□□□□□ -0.83
VPS35-211ENST00000569950 CYFIP2Q96F07 1278 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 TNIP3Q96KP6 325 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 FAM81BQ96LP2 452 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 PCDHB18PQ96TA0 734 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 GAS2L1Q99501 681 aaPredicted RBP9.86□□□□□ -0.83
VPS35-211ENST00000569950 DNAJC7Q99615 494 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 IGFLR1Q9H665 355 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 PRDM6Q9NQX0 595 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 ABI2Q9NYB9 513 aaPredicted RBP9.86□□□□□ -0.83
VPS35-211ENST00000569950 IL37Q9NZH6 218 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 AIPL1Q9NZN9 384 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 TSPAN16Q9UKR8 245 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 MAFFQ9ULX9 164 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 NENFQ9UMX5 172 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 PCDHGC3Q9UN70 934 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 PCDHB5Q9Y5E4 795 aa9.86□□□□□ -0.83
VPS35-211ENST00000569950 HELZP42694 1942 aaKnown RBP9.86□□□□□ -0.83
VPS35-211ENST00000569950 KIF26AQ9ULI4 1882 aaPredicted RBP9.85□□□□□ -0.83
VPS35-211ENST00000569950 FAM92AA1XBS5 289 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 F8VP50 259 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 MOSPD3O75425 235 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 TADA3O75528 432 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 MICAL2O94851 1124 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 C8AP07357 584 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 PLEKP08567 350 aaPredicted RBP9.85□□□□□ -0.83
VPS35-211ENST00000569950 TRIM21P19474 475 aaKnown RBP9.85□□□□□ -0.83
VPS35-211ENST00000569950 FECHP22830 423 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 ADORA2BP29275 332 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 CDC25BP30305 580 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 HOXA9P31269 272 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 CDH5P33151 784 aaPredicted RBP9.85□□□□□ -0.83
VPS35-211ENST00000569950 CA8P35219 290 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 GPD2P43304 727 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 PGFP49763 221 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 YWHAEP62258 255 aaKnown RBP9.85□□□□□ -0.83
VPS35-211ENST00000569950 FMO1Q01740 532 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 SMARCB1Q12824 385 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 MTMR3Q13615 1198 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 CCDC85BQ15834 202 aaPredicted RBP9.85□□□□□ -0.83
VPS35-211ENST00000569950 MEA1Q16626 185 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 DDR2Q16832 855 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 GOLGA7BQ2TAP0 167 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 SGO2Q562F6 1265 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 BHLHA9Q7RTU4 235 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 TMC6Q7Z403 805 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 PPFIBP1Q86W92 1011 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 TMC8Q8IU68 726 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 ANKRD52Q8NB46 1076 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 GPR152Q8TDT2 470 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 SLC35F5Q8WV83 523 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 C8orf48Q96LL4 319 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 HEXIM2Q96MH2 286 aaKnown RBP9.85□□□□□ -0.83
VPS35-211ENST00000569950 DUSP16Q9BY84 665 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 PLEKHA4Q9H4M7 779 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 IL21Q9HBE4 155 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 ZNF334Q9HCZ1 680 aaPredicted RBP9.85□□□□□ -0.83
VPS35-211ENST00000569950 KRT82Q9NSB4 513 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 HCFC1R1Q9NWW0 138 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 TJP2Q9UDY2 1190 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 KIAA1257Q9ULG3 409 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 TTC28Q96AY4 2481 aa9.85□□□□□ -0.83
VPS35-211ENST00000569950 MFAP3LO75121 409 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 CLSTN1O94985 981 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 MMEP08473 750 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 CD19P15391 556 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 NPR3P17342 541 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 GNA15P30679 374 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 CCR2P41597 374 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 STAT1P42224 750 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 EPHA5P54756 1037 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 ADKP55263 362 aaKnown RBP9.84□□□□□ -0.83
VPS35-211ENST00000569950 ZBED6P86452 979 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 CYP27A1Q02318 531 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 PDE4CQ08493 712 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 MAPRE1Q15691 268 aaKnown RBP9.84□□□□□ -0.83
VPS35-211ENST00000569950 ASTE1Q2TB18 679 aaPredicted RBP9.84□□□□□ -0.83
VPS35-211ENST00000569950 RAB41Q5JT25 222 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 PMF1Q6P1K2 205 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 VSTM1Q6UX27 236 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 C4orf50Q6ZRC1 276 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 ZNF571Q7Z3V5 609 aaPredicted RBP9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms