RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 TCEAL8Q8IYN2 117 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 ELMOD1Q8N336 334 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 AOPEPQ8N6M6 819 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 ST13P5Q8NFI4 369 aaPredicted RBP18.38■□□□□ 0.53
CLN3-217ENST00000565354 SPPL2BQ8TCT7 592 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 C2orf15Q8WU43 125 aaKnown RBP18.38■□□□□ 0.53
CLN3-217ENST00000565354 NT5C1BQ96P26 610 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 TUBGCP2Q9BSJ2 902 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 CYP3A43Q9HB55 503 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 APOBEC3GQ9HC16 384 aaKnown RBP18.38■□□□□ 0.53
CLN3-217ENST00000565354 ABI2Q9NYB9 513 aaPredicted RBP18.38■□□□□ 0.53
CLN3-217ENST00000565354 COQ4Q9Y3A0 265 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 PCDHB5Q9Y5E4 795 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 MAP1BP46821 2468 aaKnown RBP18.37■□□□□ 0.53
CLN3-217ENST00000565354 BECN2A8MW95 431 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 PMM2O15305 246 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 CCL16O15467 120 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 HCRTO43612 131 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 KRT37O76014 449 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 CD58P19256 250 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 LMO2P25791 158 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 ASPAP45381 313 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 CDR1P51861 262 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 GPC5P78333 572 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 DUSP4Q13115 394 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 PLD1Q13393 1074 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 MAPRE1Q15691 268 aaKnown RBP18.37■□□□□ 0.53
CLN3-217ENST00000565354 MGAT5BQ3V5L5 792 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 TCP11X2Q5H9J9 407 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 C4orf50Q6ZRC1 276 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 SPATA2LQ8IUW3 424 aaPredicted RBP18.37■□□□□ 0.53
CLN3-217ENST00000565354 ATAD1Q8NBU5 361 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 TNIP3Q96KP6 325 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 SEPT5Q99719 369 aaPredicted RBP18.37■□□□□ 0.53
CLN3-217ENST00000565354 RPP25Q9BUL9 199 aaKnown RBP18.37■□□□□ 0.53
CLN3-217ENST00000565354 FANCLQ9NW38 375 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 NCDNQ9UBB6 729 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 GTF3C4Q9UKN8 822 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 FBXO4Q9UKT5 387 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 INSL5Q9Y5Q6 135 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 CHD8Q9HCK8 2581 aa18.37■□□□□ 0.53
CLN3-217ENST00000565354 KANSL1LA0AUZ9 987 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 SEC24AO95486 1093 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 SDHBP21912 280 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 FSHRP23945 695 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 HOXA9P31269 272 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 ALDH1A3P47895 512 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 ZNF165P49910 485 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 YWHAEP62258 255 aaKnown RBP18.36■□□□□ 0.53
CLN3-217ENST00000565354 COL4A3Q01955 1670 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 CYP27A1Q02318 531 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 VWA3BQ502W6 1294 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 GBP6Q6ZN66 633 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 LRRTM3Q86VH5 581 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 TTC39CQ8N584 583 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 FAM200AQ8TCP9 573 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 FGF14Q92915 247 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 TATDN2Q93075 761 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 FAXDC2Q96IV6 333 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 BPIFA3Q9BQP9 254 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 DDX23Q9BUQ8 820 aaKnown RBP18.36■□□□□ 0.53
CLN3-217ENST00000565354 BCO2Q9BYV7 579 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 SDCBP2Q9H190 292 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 SPATA6Q9NWH7 488 aaPredicted RBP18.36■□□□□ 0.53
CLN3-217ENST00000565354 GCNT4Q9P109 453 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 SLC27A5Q9Y2P5 690 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 YIPF1Q9Y548 306 aa18.36■□□□□ 0.53
CLN3-217ENST00000565354 LAMTOR5O43504 91 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 TBXAS1P24557 533 aaPredicted RBP18.35■□□□□ 0.53
CLN3-217ENST00000565354 TUFMP49411 452 aaKnown RBP18.35■□□□□ 0.53
CLN3-217ENST00000565354 TPM4P67936 248 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 TWF1Q12792 350 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 MDH1BQ5I0G3 518 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 PARM1Q6UWI2 310 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 UNC93AQ86WB7 457 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 PPM1KQ8N3J5 372 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 GPR161Q8N6U8 529 aaKnown RBP18.35■□□□□ 0.53
CLN3-217ENST00000565354 EHBP1Q8NDI1 1231 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 FUCA2Q9BTY2 467 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 INTS2Q9H0H0 1204 aaKnown RBP18.35■□□□□ 0.53
CLN3-217ENST00000565354 NDST4Q9H3R1 872 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 TMLHEQ9NVH6 421 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 TAB2Q9NYJ8 693 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 CDH7Q9ULB5 785 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 PCDHGA2Q9Y5H1 932 aa18.35■□□□□ 0.53
CLN3-217ENST00000565354 ATP8B3O60423 1300 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 MYBPHLA2RUH7 354 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 ATP2C2O75185 946 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 PTPN1P18031 435 aaKnown RBP18.34■□□□□ 0.53
CLN3-217ENST00000565354 NDST1P52848 882 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 EPHB3P54753 998 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 PRKCQQ04759 706 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 CUL2Q13617 745 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 VEPH1Q14D04 833 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 MLF2Q15773 248 aaPredicted RBP18.34■□□□□ 0.53
CLN3-217ENST00000565354 TAF12Q16514 161 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 CDKAL1Q5VV42 579 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 IQCEQ6IPM2 695 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 B3GALNT2Q8NCR0 500 aa18.34■□□□□ 0.53
CLN3-217ENST00000565354 MYCBPAPQ8TBZ2 947 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms