RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CISHQ9NSE2 258 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 SLC9A2Q9UBY0 812 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 CNTNAP2Q9UHC6 1331 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 C3orf70A6NLC5 250 aaPredicted RBP13.84□□□□□ -0.19
CLN3-210ENST00000563874 E7ENQ6 273 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 PPP1R12AO14974 1030 aaPredicted RBP13.84□□□□□ -0.19
CLN3-210ENST00000563874 GSC2O15499 205 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 TBC1D12O60347 775 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 CCDC22O60826 627 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 ORC1Q13415 861 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 TSNAXIP1Q2TAA8 658 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 THEMIS2Q5TEJ8 643 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 LRRC38Q5VT99 294 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 RINLQ6ZS11 566 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 KIAA0319LQ8IZA0 1049 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 VPS52Q8N1B4 723 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 TMEM35BQ8NCS4 154 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 WDR60Q8WVS4 1066 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 MCUR1Q96AQ8 359 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 TCHPQ9BT92 498 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 SAR1AQ9NR31 198 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 LNPEPQ9UIQ6 1025 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 ZNF646O15015 1829 aaPredicted RBP13.83□□□□□ -0.19
CLN3-210ENST00000563874 NVLO15381 856 aaKnown RBP13.83□□□□□ -0.2
CLN3-210ENST00000563874 AVILO75366 819 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 FAM155BO75949 473 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 FAAP100Q0VG06 881 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 PTK7Q13308 1070 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 PIGHQ14442 188 aaPredicted RBP13.83□□□□□ -0.2
CLN3-210ENST00000563874 SNX30Q5VWJ9 437 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 KRT27Q7Z3Y8 459 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 PDIK1LQ8N165 341 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 NRG4Q8WWG1 115 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 AKT1S1Q96B36 256 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 TLE6Q9H808 572 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 KCNK13Q9HB14 408 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 CNTN6Q9UQ52 1028 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 FAM237BA0A1B0GVD1 139 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 LRCH4O75427 683 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 STAM2O75886 525 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 PYGBP11216 843 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 ELK3P41970 407 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 ZNF132P52740 706 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 KLHL38Q2WGJ6 581 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 GNPTABQ3T906 1256 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 KBTBD12Q3ZCT8 623 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 MDH1BQ5I0G3 518 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 TMEM154Q6P9G4 183 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 TEX9Q8N6V9 391 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 SPDYE1Q8NFV5 336 aaPredicted RBP13.83□□□□□ -0.2
CLN3-210ENST00000563874 PTCD3Q96EY7 689 aaKnown RBP13.83□□□□□ -0.2
CLN3-210ENST00000563874 GMLQ99445 158 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 KAT6AQ92794 2004 aa13.83□□□□□ -0.2
CLN3-210ENST00000563874 A0A0B4J269 797 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 E5RJQ4 531 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 CAPN9O14815 690 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 MYL2P10916 166 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 CD19P15391 556 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 GCLCP48506 637 aaPredicted RBP13.82□□□□□ -0.2
CLN3-210ENST00000563874 RTP1P59025 263 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 YWHAGP61981 247 aaKnown RBP eCLIP13.82□□□□□ -0.2
CLN3-210ENST00000563874 MXRA7P84157 204 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 ZC3H18Q86VM9 953 aaKnown RBP13.82□□□□□ -0.2
CLN3-210ENST00000563874 TMEM130Q8N3G9 435 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 RDM1Q8NG50 284 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 HSPH1Q92598 858 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 LPAR1Q92633 364 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 GPRASP2Q96D09 838 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 ZBTB10Q96DT7 871 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 NSL1Q96IY1 281 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 ANKRD27Q96NW4 1050 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 DHRS4Q9BTZ2 278 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 VPS11Q9H270 941 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 DDX56Q9NY93 547 aaKnown RBP13.82□□□□□ -0.2
CLN3-210ENST00000563874 TRPC5Q9UL62 973 aaPredicted RBP13.82□□□□□ -0.2
CLN3-210ENST00000563874 STYXL1Q9Y6J8 313 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 IKBKGQ9Y6K9 419 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 VWA5AO00534 786 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 RASA2Q15283 850 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 PPP1R15BQ5SWA1 713 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 DENND1BQ6P3S1 775 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 NPNTQ6UXI9 565 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 ABHD15Q6UXT9 468 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 PCGF5Q86SE9 256 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 ALYREFQ86V81 257 aaKnown RBP13.82□□□□□ -0.2
CLN3-210ENST00000563874 RFX6Q8HWS3 928 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 UPF1Q92900 1129 aaKnown RBP eCLIP13.82□□□□□ -0.2
CLN3-210ENST00000563874 MECRQ9BV79 373 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 CALN1Q9BXU9 219 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 TAS2R1Q9NYW7 299 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 DLGAP2Q9P1A6 1054 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 STOML1Q9UBI4 398 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 DOCK5Q9H7D0 1870 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 TCRBV9S1A1TA0A576 114 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 KBTBD13C9JR72 458 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 TM9SF1O15321 606 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 TBX10O75333 385 aa13.82□□□□□ -0.2
CLN3-210ENST00000563874 ASS1P00966 412 aaKnown RBP13.82□□□□□ -0.2
CLN3-210ENST00000563874 ESRRAP11474 423 aaPredicted RBP13.82□□□□□ -0.2
CLN3-210ENST00000563874 KRT3P12035 628 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms