RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 L1RE1Q9UN81 338 aa11.19□□□□□ -0.62
SF3B3-204ENST00000563739 CYB561D2O14569 222 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 TNFRSF10BO14763 440 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 CYP2F1P24903 491 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 ZNF131P52739 623 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 SIM1P81133 766 aaPredicted RBP11.18□□□□□ -0.62
SF3B3-204ENST00000563739 COL28A1Q2UY09 1125 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 C2orf27AQ580R0 203 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 EMC10Q5UCC4 262 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 ARMCX5Q6P1M9 558 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 SLC23A3Q6PIS1 610 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 PDZD3Q86UT5 571 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 ARL14EPQ8N8R7 260 aaPredicted RBP11.18□□□□□ -0.62
SF3B3-204ENST00000563739 SYT2Q8N9I0 419 aaPredicted RBP11.18□□□□□ -0.62
SF3B3-204ENST00000563739 FBXO18Q8NFZ0 1043 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 SH3RF2Q8TEC5 729 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 C2orf15Q8WU43 125 aaKnown RBP11.18□□□□□ -0.62
SF3B3-204ENST00000563739 GCNAQ96QF7 691 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 PYM1Q9BRP8 204 aaKnown RBP11.18□□□□□ -0.62
SF3B3-204ENST00000563739 TIPINQ9BVW5 301 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 TMEM206Q9H813 350 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.18□□□□□ -0.62
SF3B3-204ENST00000563739 DUS2Q9NX74 493 aaKnown RBP11.18□□□□□ -0.62
SF3B3-204ENST00000563739 ZMYM5Q9UJ78 669 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 DNM3Q9UQ16 869 aa11.18□□□□□ -0.62
SF3B3-204ENST00000563739 ITPKAP23677 461 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 SLC6A11P48066 632 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 TRAPPC10P48553 1259 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 ANAPC15P60006 121 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 USP46P62068 366 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 STRN3Q13033 797 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 TMEM132DQ14C87 1099 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 USP39Q53GS9 565 aaKnown RBP11.17□□□□□ -0.62
SF3B3-204ENST00000563739 PDCL2Q8N4E4 241 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 ALLCQ8N6M5 410 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 MRPS31Q92665 395 aaKnown RBP11.17□□□□□ -0.62
SF3B3-204ENST00000563739 ATP2A3Q93084 1043 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 CAMK1GQ96NX5 476 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 REEP2Q9BRK0 252 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 RPF1Q9H9Y2 349 aaKnown RBP11.17□□□□□ -0.62
SF3B3-204ENST00000563739 CD93Q9NPY3 652 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 TMEM30AQ9NV96 361 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 ARHGAP26Q9UNA1 814 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 MAGED2Q9UNF1 606 aaPredicted RBP11.17□□□□□ -0.62
SF3B3-204ENST00000563739 DERAQ9Y315 318 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 NME7Q9Y5B8 376 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 PCDHB5Q9Y5E4 795 aa11.17□□□□□ -0.62
SF3B3-204ENST00000563739 MUC22E2RYF6 1773 aaPredicted RBP11.16□□□□□ -0.62
SF3B3-204ENST00000563739 SCAMP3O14828 347 aaKnown RBP11.16□□□□□ -0.62
SF3B3-204ENST00000563739 OLFM2O95897 454 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 CSH1P0DML2 217 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 CSH2P0DML3 217 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 ACAT1P24752 427 aaKnown RBP11.16□□□□□ -0.62
SF3B3-204ENST00000563739 IFNAR2P48551 515 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 ACOT2P49753 483 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 TAF6P49848 677 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 SCAPQ12770 1279 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 PSMD2Q13200 908 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 INTS6LQ5JSJ4 861 aaKnown RBP11.16□□□□□ -0.62
SF3B3-204ENST00000563739 LIMS2Q7Z4I7 341 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 C11orf74Q86VG3 221 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 MIB1Q86YT6 1006 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 SYT12Q8IV01 421 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 SLC41A1Q8IVJ1 513 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 TXNDC5Q8NBS9 432 aaKnown RBP11.16□□□□□ -0.62
SF3B3-204ENST00000563739 CRELD1Q96HD1 420 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 C8orf76Q96K31 380 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 TSPAN18Q96SJ8 248 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 PLIN2Q99541 437 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 MSTO1Q9BUK6 570 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 TRPC7Q9HCX4 862 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 BLOC1S4Q9NUP1 217 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 CACNA2D2Q9NY47 1150 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 C2CD2Q9Y426 696 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.16□□□□□ -0.62
SF3B3-204ENST00000563739 STYXL1Q9Y6J8 313 aa11.16□□□□□ -0.62
SF3B3-204ENST00000563739 HNRNPDLO14979 420 aaKnown RBP11.15□□□□□ -0.62
SF3B3-204ENST00000563739 XPOTO43592 962 aaKnown RBP11.15□□□□□ -0.62
SF3B3-204ENST00000563739 PRPF40AO75400 957 aaKnown RBP11.15□□□□□ -0.62
SF3B3-204ENST00000563739 KLF8O95600 359 aaPredicted RBP11.15□□□□□ -0.62
SF3B3-204ENST00000563739 PLA2G4BP0C869 781 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 ADSSP30520 456 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 PRPHP41219 470 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 LIG4P49917 911 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 SMARCB1Q12824 385 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 TRIM29Q14134 588 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 ANKRD1Q15327 319 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 KRT79Q5XKE5 535 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 CCDC83Q8IWF9 413 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 C1orf127Q8N9H9 656 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 FAM212AQ96EL1 285 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 ABCB6Q9NP58 842 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 DPP3Q9NY33 737 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 SIX4Q9UIU6 781 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 DSEQ9UL01 958 aa11.15□□□□□ -0.62
SF3B3-204ENST00000563739 USP9XQ93008 2570 aaPredicted RBP11.15□□□□□ -0.63
SF3B3-204ENST00000563739 TMEM131Q92545 1883 aa11.15□□□□□ -0.63
SF3B3-204ENST00000563739 TP53BP1Q12888 1972 aaPredicted RBP11.14□□□□□ -0.63
SF3B3-204ENST00000563739 A0A0A0MRY4 1105 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 KPNA7A9QM74 516 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms