RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 E7EVH7 732 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 RRP9O43818 475 aaKnown RBP6.53□□□□□ -1.36
SCFD1-208ENST00000553278 HNRNPA1P09651 372 aaKnown RBP eCLIP6.53□□□□□ -1.36
SCFD1-208ENST00000553278 MYCLP12524 364 aaPredicted RBP6.53□□□□□ -1.36
SCFD1-208ENST00000553278 FDXRP22570 491 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 AKT1P31749 480 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 PTTG1IPP53801 180 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 KRT17Q04695 432 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 TCF15Q12870 199 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 ATP1A4Q13733 1029 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 KCNAB1Q14722 419 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 UBXN2BQ14CS0 331 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 RPS6KA2Q15349 733 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 PRR31Q5SQ13 230 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 HAUS3Q68CZ6 603 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 RINT1Q6NUQ1 792 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 PPP1R32Q7Z5V6 425 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 TTC30AQ86WT1 665 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 OR14K1Q8NGZ2 314 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 TBC1D15Q8TC07 691 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 ADAMTS15Q8TE58 950 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 LMAN2LQ9H0V9 348 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 SLC25A32Q9H2D1 315 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 CHODLQ9H9P2 273 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 G6PC2Q9NQR9 355 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 FBXO34Q9NWN3 711 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 TBX20Q9UMR3 447 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 DAPP1Q9UN19 280 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 GPR34Q9UPC5 381 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 HPSEQ9Y251 543 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 DERAQ9Y315 318 aa6.53□□□□□ -1.36
SCFD1-208ENST00000553278 EFCAB8A8MWE9 144 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 USO1O60763 962 aaKnown RBP6.52□□□□□ -1.37
SCFD1-208ENST00000553278 KRT38O76015 456 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 TMEM63AO94886 807 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 RASAL1O95294 804 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 CNPP09543 421 aaKnown RBP6.52□□□□□ -1.37
SCFD1-208ENST00000553278 MAN2A2P49641 1150 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 MCM2P49736 904 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 DRG2P55039 364 aaKnown RBP6.52□□□□□ -1.37
SCFD1-208ENST00000553278 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.52□□□□□ -1.37
SCFD1-208ENST00000553278 GPS1Q13098 491 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 ACAP1Q15027 740 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 ZNF750Q32MQ0 723 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 ATG16L1Q676U5 607 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 TMEM132EQ6IEE7 984 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 USP38Q8NB14 1042 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 ZMIZ2Q8NF64 920 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 CPT1BQ92523 772 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 FAM227BQ96M60 508 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 KLHL32Q96NJ5 620 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 KRTAP9-9Q9BYP9 154 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 KRTAP9-4Q9BYQ2 154 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 IL23AQ9NPF7 189 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 KRT84Q9NSB2 600 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 NKIRAS2Q9NYR9 191 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 NDUFAF4Q9P032 175 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 MBD1Q9UIS9 605 aaPredicted RBP6.52□□□□□ -1.37
SCFD1-208ENST00000553278 NOL7Q9UMY1 257 aaKnown RBP6.52□□□□□ -1.37
SCFD1-208ENST00000553278 CDY1Q9Y6F8 540 aa6.52□□□□□ -1.37
SCFD1-208ENST00000553278 PNPLA7Q6ZV29 1317 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 OR2W5A6NFC9 320 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 BTBD11A6QL63 1104 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 RGS10O43665 173 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 TSPAN3O60637 253 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 PEX10O60683 326 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 TIPRLO75663 272 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 ATXN1LP0C7T5 689 aaKnown RBP6.51□□□□□ -1.37
SCFD1-208ENST00000553278 CHMP24386 653 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 RPL13P26373 211 aaKnown RBP6.51□□□□□ -1.37
SCFD1-208ENST00000553278 KLRK1P26718 216 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 LIMS1P48059 325 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 ADAM8P78325 824 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 HGFACQ04756 655 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 KCNMB1Q16558 191 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 MEA1Q16626 185 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 BMT2Q1RMZ1 405 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 BTBD16Q32M84 506 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 TRIM60Q495X7 471 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 ATXN7L2Q5T6C5 722 aaPredicted RBP6.51□□□□□ -1.37
SCFD1-208ENST00000553278 TTC22Q5TAA0 569 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 SLC9C2Q5TAH2 1124 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 LAYNQ6UX15 382 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 KCTD20Q7Z5Y7 419 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 GALNT5Q7Z7M9 940 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 IGDCC3Q8IVU1 814 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 PDPRQ8NCN5 879 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 ZFP28Q8NHY6 868 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 RABGGTAQ92696 567 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 SLC46A1Q96NT5 459 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 MED15Q96RN5 788 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 GPHA2Q96T91 129 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 REEP2Q9BRK0 252 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 CENPOQ9BU64 300 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 SLC46A2Q9BY10 475 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 TTYH3Q9C0H2 523 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 ZCWPW1Q9H0M4 648 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 TMEM168Q9H0V1 697 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 CCDC68Q9H2F9 335 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 NELFAQ9H3P2 528 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms