RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 PTPROQ16827 1216 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 GOLGA7BQ2TAP0 167 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 TAF3Q5VWG9 929 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 ACAD10Q6JQN1 1059 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 RAD9BQ6WBX8 426 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 TAS1R1Q7RTX1 841 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 MRPL43Q8N983 215 aaKnown RBP16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 IPO4Q8TEX9 1081 aaKnown RBP16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 HDAC7Q8WUI4 952 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 KCTD13Q8WZ19 329 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 PPP2R3CQ969Q6 453 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 C8orf48Q96LL4 319 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 TCF25Q9BQ70 676 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 CLSTN3Q9BQT9 956 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 ZSWIM1Q9BR11 485 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 B3GNT5Q9BYG0 378 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 ACP6Q9NPH0 428 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 ENTPD7Q9NQZ7 604 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 FAM49BQ9NUQ9 324 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 SEPT11Q9NVA2 429 aaKnown RBP16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 COMMD8Q9NX08 183 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 EHD2Q9NZN4 543 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 LCMT1Q9UIC8 334 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 MYO9BQ13459 2157 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 LAMA2P24043 3122 aaKnown RBP16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 ANKRD62A6NC57 917 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 SART1O43290 800 aaKnown RBP16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 H2AFZP0C0S5 128 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 MYOGP15173 224 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 ATF2P15336 505 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 MMP8P22894 467 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 DEKP35659 375 aaKnown RBP16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 SCNN1AP37088 669 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 RPL10AP62906 217 aaKnown RBP16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 CYP27A1Q02318 531 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 PLD1Q13393 1074 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 SLC39A12Q504Y0 691 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 CCDC122Q5T0U0 273 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 H2AFVQ71UI9 128 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 SCML4Q8N228 414 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 SLC35F5Q8WV83 523 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 UBE2Q2Q8WVN8 375 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 MED10Q9BTT4 135 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 TSGA10Q9BZW7 698 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 NKX2-4Q9H2Z4 354 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 KRT82Q9NSB4 513 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 LMCD1Q9NZU5 365 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 ATG2AQ2TAZ0 1938 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 GREB1Q4ZG55 1949 aa16.93■□□□□ 0.3
PRPF40A-212ENST00000545856 MTMR11A4FU01 709 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 BTNL10A8MVZ5 291 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 ATP2C2O75185 946 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 CCDC130P13994 396 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 OR1D2P34982 312 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 PBX2P40425 430 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 GABRB2P47870 512 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 VAV2P52735 878 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 GFPT1Q06210 699 aaPredicted RBP16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 PDCLQ13371 301 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 ORC1Q13415 861 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 TCEAL1Q15170 157 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 PRSS55Q6UWB4 352 aaPredicted RBP16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 CLEC20AQ6ZU45 233 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 PAQR9Q6ZVX9 377 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 LRRTM3Q86VH5 581 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 TTC30AQ86WT1 665 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 C1orf131Q8NDD1 294 aaKnown RBP16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 SPATA17Q96L03 361 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 CDCA3Q99618 268 aaPredicted RBP16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 SLC4A5Q9BY07 1137 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 AVENQ9NQS1 362 aaPredicted RBP16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 ADGRG1Q9Y653 693 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 SCINQ9Y6U3 715 aa16.92■□□□□ 0.3
PRPF40A-212ENST00000545856 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 WDR27A2RRH5 827 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 C2orf71A6NGG8 1288 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 TEX28O15482 410 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 PJA2O43164 708 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 HCRTO43612 131 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 AP1G2O75843 785 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 FBXO21O94952 628 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 CXCL14O95715 111 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 TMEM253P0C7T8 217 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 MAGEA1P43355 309 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 LIN9Q5TKA1 542 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 TMEM110Q86TL2 294 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 ERICH1Q86X53 443 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 TCEAL8Q8IYN2 117 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 CTNNBL1Q8WYA6 563 aaPredicted RBP16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 SECISBP2LQ93073 1101 aaKnown RBP16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 B3GALT6Q96L58 329 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 PCDHB18PQ96TA0 734 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 TRIM62Q9BVG3 475 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 ALG13Q9NP73 1137 aaKnown RBP16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 TMEM51Q9NW97 253 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 ZKSCAN5Q9Y2L8 839 aa16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 ZNF638Q14966 1978 aaKnown RBP16.91■□□□□ 0.3
PRPF40A-212ENST00000545856 PLXNA3P51805 1871 aa16.9■□□□□ 0.3
PRPF40A-212ENST00000545856 A0A0A6YYK5 440 aaPredicted RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms