RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 IRF2BP2Q7Z5L9 587 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 C14orf80Q86SX3 495 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 RSPH3Q86UC2 560 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 SPATA24Q86W54 205 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 ZBED8Q8IZ13 594 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 ANKRD13CQ8N6S4 541 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 PTCD3Q96EY7 689 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 PAWRQ96IZ0 340 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 VPS50Q96JG6 964 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 DDX23Q9BUQ8 820 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 PITPNM3Q9BZ71 974 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 ARHGAP39Q9C0H5 1083 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 UNC45AQ9H3U1 944 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 FAM207AQ9NSI2 230 aaPredicted RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 FLRT1Q9NZU1 646 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 PCDHA4Q9UN74 947 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 MRPL11Q9Y3B7 192 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 PTPRSQ13332 1948 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 KANSL1LA0AUZ9 987 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 TRPA1O75762 1119 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 ASMTLO95671 621 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 HMGCRP04035 888 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 RXRAP19793 462 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 ITIH2P19823 946 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 SREBF1P36956 1147 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 BPIFB3P59826 476 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 PCNX4Q63HM2 1172 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 DPY19L2P1Q6NXN4 242 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 UNC5DQ6UXZ4 953 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 ALLCQ8N6M5 410 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 TEX19Q8NA77 164 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 CD99L2Q8TCZ2 262 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 DENND1AQ8TEH3 1009 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 IPCEF1Q8WWN9 437 aaPredicted RBP5.52□□□□□ -1.53
USP28-213ENST00000544967 ECSITQ9BQ95 431 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 OXCT2Q9BYC2 517 aaPredicted RBP5.52□□□□□ -1.53
USP28-213ENST00000544967 ABCG4Q9H172 646 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 VTA1Q9NP79 307 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 KRT82Q9NSB4 513 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 SCHIP1Q9P0W5 487 aaPredicted RBP5.52□□□□□ -1.53
USP28-213ENST00000544967 SPATA7Q9P0W8 599 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 CPA4Q9UI42 421 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 OGDHLQ9ULD0 1010 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 ARHGAP10A1A4S6 786 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 FAM47DPA6NHR8 397 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 SEC13P55735 322 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 JAM2P57087 298 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 RTP1P59025 263 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 ASPHQ12797 758 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 STK4Q13043 487 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 SPARCL1Q14515 664 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 SNRNP48Q6IEG0 339 aaKnown RBP5.52□□□□□ -1.53
USP28-213ENST00000544967 TAPT1Q6NXT6 567 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 CCDC62Q6P9F0 684 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 HS2ST1Q7LGA3 356 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 ZC3H18Q86VM9 953 aaKnown RBP5.52□□□□□ -1.53
USP28-213ENST00000544967 BLIDQ8IZY5 108 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.52□□□□□ -1.53
USP28-213ENST00000544967 NPLOC4Q8TAT6 608 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 SYTL5Q8TDW5 730 aaPredicted RBP5.52□□□□□ -1.53
USP28-213ENST00000544967 DDI1Q8WTU0 396 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 NRG4Q8WWG1 115 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 TRIB2Q92519 343 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 STMN2Q93045 179 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 BIRC8Q96P09 236 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 HINFPQ9BQA5 517 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 CCDC77Q9BR77 488 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 COL20A1Q9P218 1284 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 ARMCX3Q9UH62 379 aaPredicted RBP5.52□□□□□ -1.53
USP28-213ENST00000544967 DMTF1Q9Y222 760 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 ZMYM2Q9UBW7 1377 aa5.52□□□□□ -1.53
USP28-213ENST00000544967 NFASCO94856 1347 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 FRMPD2Q68DX3 1309 aaPredicted RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 FAM205CA6NFA0 338 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 E9PBE3 544 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 GSC2O15499 205 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 SORBS3O60504 671 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 SNAI1O95863 264 aaPredicted RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 CYP1A1P04798 512 aaPredicted RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 FCER1AP12319 257 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 ADORA2AP29274 412 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 CDKN1CP49918 316 aaPredicted RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 SCNN1BP51168 640 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 LBX1P52954 281 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 PRKCZQ05513 592 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 RCN1Q15293 331 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 ALKBH5Q6P6C2 394 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 CCBE1Q6UXH8 406 aaPredicted RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 OTUD6AQ7L8S5 288 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 FRMD5Q7Z6J6 570 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 DAAM2Q86T65 1068 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 CABP7Q86V35 215 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 FBXO11Q86XK2 927 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 RHOT2Q8IXI1 618 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 BBS5Q8N3I7 341 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 SLC43A3Q8NBI5 491 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 KLHDC9Q8NEP7 349 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 TRPV1Q8NER1 839 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 SLC30A5Q8TAD4 765 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 FNDC8Q8TC99 324 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms