RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 PLCB2Q00722 1185 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 MYO1EQ12965 1108 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 RUNX3Q13761 415 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 PON2Q15165 354 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 TAF12Q16514 161 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 ITPRIPL2Q3MIP1 535 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 PKN3Q6P5Z2 889 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 C1orf228Q6PIY5 440 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 HSCBQ8IWL3 235 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 MYLPFQ96A32 169 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 CCDC127Q96BQ5 260 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 PCED1BQ96HM7 432 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 SPATA17Q96L03 361 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 CGRRF1Q99675 332 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 SYT15Q9BQS2 421 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 KCTD10Q9H3F6 313 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 EBF3Q9H4W6 596 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 CFAP45Q9UL16 551 aa12.64□□□□□ -0.39
CLSTN3-211ENST00000541667 PTPRDP23468 1912 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 FAM237AA0A1B0GTK4 181 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 C2orf78A6NCI8 922 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 TRDMT1O14717 391 aaKnown RBP12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 C4BPAP04003 597 aaKnown RBP12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 TNNI1P19237 187 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 BDNFP23560 247 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 CMA1P23946 247 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 GNL1P36915 607 aaPredicted RBP12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 CCR3P51677 355 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 MYL6P60660 151 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 ZNF77Q15935 545 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 TMEM196Q5HYL7 178 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 DGKKQ5KSL6 1271 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 NAIF1Q69YI7 327 aaPredicted RBP12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 FSTL4Q6MZW2 842 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 VSTM1Q6UX27 236 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 SPATA2LQ8IUW3 424 aaPredicted RBP12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 MYCBPAPQ8TBZ2 947 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 PARD3BQ8TEW8 1205 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 MRPS31Q92665 395 aaKnown RBP12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 EZH1Q92800 747 aaPredicted RBP12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 GCNAQ96QF7 691 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 DPEP3Q9H4B8 488 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 THG1LQ9NWX6 298 aaKnown RBP12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 FAM13BQ9NYF5 915 aa12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 CGNQ9P2M7 1197 aaKnown RBP12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 MAGEC2Q9UBF1 373 aaPredicted RBP12.63□□□□□ -0.39
CLSTN3-211ENST00000541667 CACNA1AO00555 2505 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 ATG2BQ96BY7 2078 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 ZNF638Q14966 1978 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 A0A1B0GVL5 298 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 VNN1O95497 513 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 HOXA6P31267 233 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 AVPR1AP37288 418 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 GALK1P51570 392 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 FAM160A1Q05DH4 1040 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 WDR72Q3MJ13 1102 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 KMT5BQ4FZB7 885 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 C1orf220Q5T0J3 134 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 PAQR9Q6ZVX9 377 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 SLC9A9Q8IVB4 645 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 SCN4BQ8IWT1 228 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 SYNPOQ8N3V7 929 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 ARL14EPQ8N8R7 260 aaPredicted RBP12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 ELMO3Q96BJ8 720 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 C8orf48Q96LL4 319 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 CEP295NLQ96MC4 621 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 MMS19Q96T76 1030 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 TTLL2Q9BWV7 592 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 B3GNT5Q9BYG0 378 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 RNF38Q9H0F5 515 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 LINC00597Q9H2U6 94 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 VRTNQ9H8Y1 702 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 DLL3Q9NYJ7 618 aa12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 UXTQ9UBK9 157 aaPredicted RBP12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 SMG5Q9UPR3 1016 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-211ENST00000541667 LRRIQ3A6PVS8 624 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 CHURC1-FNTBB4DL54 471 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 TCF3P15923 654 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 PFKFB1P16118 471 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 PTPN1P18031 435 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 FNTBP49356 437 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 NRLP54845 237 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 CDH8P55286 799 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 DLG4P78352 724 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 PSMD2Q13200 908 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 SRSF5Q13243 272 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 LRRC32Q14392 662 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 EML3Q32P44 896 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 TDRD10Q5VZ19 366 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 C4orf50Q6ZRC1 276 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 HS2ST1Q7LGA3 356 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 FNBP1Q96RU3 617 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 SDCBP2Q9H190 292 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 KIF9Q9HAQ2 790 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 PARD6AQ9NPB6 346 aa12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 POLR3BQ9NW08 1133 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-211ENST00000541667 ZNF840PA6NDX5 716 aa12.6□□□□□ -0.39
CLSTN3-211ENST00000541667 F8VP50 259 aa12.6□□□□□ -0.39
CLSTN3-211ENST00000541667 CLDN5O00501 218 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms