RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 FUBP3Q96I24 572 aaKnown RBP eCLIP25.28■■□□□ 1.64
CPSF1-202ENST00000527827 MTMR12Q9C0I1 747 aa25.28■■□□□ 1.64
CPSF1-202ENST00000527827 DUSP15Q9H1R2 295 aaPredicted RBP25.28■■□□□ 1.64
CPSF1-202ENST00000527827 PTPRDP23468 1912 aa25.27■■□□□ 1.64
CPSF1-202ENST00000527827 FRMD3A2A2Y4 597 aa25.27■■□□□ 1.64
CPSF1-202ENST00000527827 VPS37CA5D8V6 355 aaPredicted RBP25.27■■□□□ 1.64
CPSF1-202ENST00000527827 C2orf78A6NCI8 922 aa25.27■■□□□ 1.64
CPSF1-202ENST00000527827 CKMP06732 381 aa25.27■■□□□ 1.64
CPSF1-202ENST00000527827 IFNAR2P48551 515 aa25.27■■□□□ 1.64
CPSF1-202ENST00000527827 LHX1P48742 406 aa25.27■■□□□ 1.64
CPSF1-202ENST00000527827 FAM171BQ6P995 826 aa25.27■■□□□ 1.64
CPSF1-202ENST00000527827 SYCP3Q8IZU3 236 aa25.27■■□□□ 1.64
CPSF1-202ENST00000527827 TTC16Q8NEE8 873 aa25.27■■□□□ 1.64
CPSF1-202ENST00000527827 ATP2A3Q93084 1043 aa25.27■■□□□ 1.64
CPSF1-202ENST00000527827 EXOC4Q96A65 974 aa25.27■■□□□ 1.64
CPSF1-202ENST00000527827 PCIF1Q9H4Z3 704 aa25.27■■□□□ 1.64
CPSF1-202ENST00000527827 ATP2C2O75185 946 aa25.26■■□□□ 1.63
CPSF1-202ENST00000527827 IDEP14735 1019 aa25.26■■□□□ 1.63
CPSF1-202ENST00000527827 PCSK1P29120 753 aa25.26■■□□□ 1.63
CPSF1-202ENST00000527827 PMLP29590 882 aa25.26■■□□□ 1.63
CPSF1-202ENST00000527827 MAGEA11P43364 429 aa25.26■■□□□ 1.63
CPSF1-202ENST00000527827 DMC1Q14565 340 aa25.26■■□□□ 1.63
CPSF1-202ENST00000527827 LIMS2Q7Z4I7 341 aa25.26■■□□□ 1.63
CPSF1-202ENST00000527827 SH3RF2Q8TEC5 729 aa25.26■■□□□ 1.63
CPSF1-202ENST00000527827 CHAMP1Q96JM3 812 aa25.26■■□□□ 1.63
CPSF1-202ENST00000527827 LINC00597Q9H2U6 94 aa25.26■■□□□ 1.63
CPSF1-202ENST00000527827 VPS45Q9NRW7 570 aa25.26■■□□□ 1.63
CPSF1-202ENST00000527827 EBF1Q9UH73 591 aa25.26■■□□□ 1.63
CPSF1-202ENST00000527827 LAMA1P25391 3075 aa25.25■■□□□ 1.63
CPSF1-202ENST00000527827 DCLK1O15075 740 aa25.25■■□□□ 1.63
CPSF1-202ENST00000527827 APBB3O95704 486 aa25.25■■□□□ 1.63
CPSF1-202ENST00000527827 TMEM191BP0C7N4 346 aa25.25■■□□□ 1.63
CPSF1-202ENST00000527827 TCF3P15923 654 aa25.25■■□□□ 1.63
CPSF1-202ENST00000527827 ALCAMQ13740 583 aa25.25■■□□□ 1.63
CPSF1-202ENST00000527827 LMBRD2Q68DH5 695 aaPredicted RBP25.25■■□□□ 1.63
CPSF1-202ENST00000527827 TCEAL6Q6IPX3 200 aa25.25■■□□□ 1.63
CPSF1-202ENST00000527827 FAM173BQ6P4H8 233 aa25.25■■□□□ 1.63
CPSF1-202ENST00000527827 NOC3LQ8WTT2 800 aaKnown RBP25.25■■□□□ 1.63
CPSF1-202ENST00000527827 KBTBD7Q8WVZ9 684 aa25.25■■□□□ 1.63
CPSF1-202ENST00000527827 TCEAL3Q969E4 200 aa25.25■■□□□ 1.63
CPSF1-202ENST00000527827 PTPRJQ12913 1337 aa25.25■■□□□ 1.63
CPSF1-202ENST00000527827 ABCA7Q8IZY2 2146 aa25.25■■□□□ 1.63
CPSF1-202ENST00000527827 NUP205Q92621 2012 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 A0A087X0B3 334 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 PRPF6O94906 941 aaKnown RBP25.24■■□□□ 1.63
CPSF1-202ENST00000527827 LMO2P25791 158 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 TXLNAP40222 546 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 DPH6Q7L8W6 267 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 GPD1LQ8N335 351 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 FSIP1Q8NA03 581 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 OR5B17Q8NGF7 314 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 ACDQ96AP0 544 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 SYT15Q9BQS2 421 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 CRTAC1Q9NQ79 661 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 PANK4Q9NVE7 773 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 INTS13Q9NVM9 706 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 ANGPTL2Q9UKU9 493 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 ARHGAP26Q9UNA1 814 aa25.24■■□□□ 1.63
CPSF1-202ENST00000527827 HDCP19113 662 aa25.23■■□□□ 1.63
CPSF1-202ENST00000527827 PSMC1P62191 440 aaKnown RBP25.23■■□□□ 1.63
CPSF1-202ENST00000527827 ZXDBP98169 803 aa25.23■■□□□ 1.63
CPSF1-202ENST00000527827 RESTQ13127 1097 aa25.23■■□□□ 1.63
CPSF1-202ENST00000527827 PSMD2Q13200 908 aa25.23■■□□□ 1.63
CPSF1-202ENST00000527827 CUL4AQ13619 759 aa25.23■■□□□ 1.63
CPSF1-202ENST00000527827 KCNB1Q14721 858 aa25.23■■□□□ 1.63
CPSF1-202ENST00000527827 ANKRD36BP1Q96IX9 119 aa25.23■■□□□ 1.63
CPSF1-202ENST00000527827 LSM14BQ9BX40 385 aaKnown RBP25.23■■□□□ 1.63
CPSF1-202ENST00000527827 PANK2Q9BZ23 570 aa25.23■■□□□ 1.63
CPSF1-202ENST00000527827 MAGEC2Q9UBF1 373 aaPredicted RBP25.23■■□□□ 1.63
CPSF1-202ENST00000527827 USP46P62068 366 aa25.22■■□□□ 1.63
CPSF1-202ENST00000527827 CEBPZQ03701 1054 aaKnown RBP25.22■■□□□ 1.63
CPSF1-202ENST00000527827 MYO1EQ12965 1108 aa25.22■■□□□ 1.63
CPSF1-202ENST00000527827 NR1H3Q13133 447 aa25.22■■□□□ 1.63
CPSF1-202ENST00000527827 ELF2Q15723 593 aa25.22■■□□□ 1.63
CPSF1-202ENST00000527827 C4orf50Q6ZRC1 276 aa25.22■■□□□ 1.63
CPSF1-202ENST00000527827 CCDC73Q6ZRK6 1079 aa25.22■■□□□ 1.63
CPSF1-202ENST00000527827 MYLPFQ96A32 169 aa25.22■■□□□ 1.63
CPSF1-202ENST00000527827 HPDLQ96IR7 371 aa25.22■■□□□ 1.63
CPSF1-202ENST00000527827 SPATA17Q96L03 361 aa25.22■■□□□ 1.63
CPSF1-202ENST00000527827 CDH9Q9ULB4 789 aa25.22■■□□□ 1.63
CPSF1-202ENST00000527827 ANTXRLA6NF34 631 aa25.21■■□□□ 1.63
CPSF1-202ENST00000527827 RHOBTB1O94844 696 aa25.21■■□□□ 1.63
CPSF1-202ENST00000527827 KCNK5O95279 499 aa25.21■■□□□ 1.63
CPSF1-202ENST00000527827 BDNFP23560 247 aa25.21■■□□□ 1.63
CPSF1-202ENST00000527827 OPRD1P41143 372 aa25.21■■□□□ 1.63
CPSF1-202ENST00000527827 STAT6P42226 847 aa25.21■■□□□ 1.63
CPSF1-202ENST00000527827 GAB4Q2WGN9 574 aa25.21■■□□□ 1.63
CPSF1-202ENST00000527827 RNF43Q68DV7 783 aa25.21■■□□□ 1.63
CPSF1-202ENST00000527827 VSTM1Q6UX27 236 aa25.21■■□□□ 1.63
CPSF1-202ENST00000527827 GLIS3Q8NEA6 775 aa25.21■■□□□ 1.63
CPSF1-202ENST00000527827 USP33Q8TEY7 942 aa25.21■■□□□ 1.63
CPSF1-202ENST00000527827 UPF2Q9HAU5 1272 aaKnown RBP25.21■■□□□ 1.63
CPSF1-202ENST00000527827 THADAQ6YHU6 1953 aa25.21■■□□□ 1.63
CPSF1-202ENST00000527827 BCLAF3A2AJT9 711 aaKnown RBP25.2■■□□□ 1.62
CPSF1-202ENST00000527827 K7EQS6 105 aa25.2■■□□□ 1.62
CPSF1-202ENST00000527827 DGKEP52429 567 aa25.2■■□□□ 1.62
CPSF1-202ENST00000527827 SHC2P98077 582 aa25.2■■□□□ 1.62
CPSF1-202ENST00000527827 CREB5Q02930 508 aa25.2■■□□□ 1.62
CPSF1-202ENST00000527827 CBWD2Q8IUF1 395 aa25.2■■□□□ 1.62
CPSF1-202ENST00000527827 INVSQ9Y283 1065 aa25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms