RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 EEF1DP3Q658K8 133 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 FUT10Q6P4F1 479 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 C1orf186Q6ZWK4 172 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 TAS1R1Q7RTX1 841 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 KCNK18Q7Z418 384 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 DAW1Q8N136 415 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 TOP6BLQ8N6T0 577 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 SYT2Q8N9I0 419 aaPredicted RBP7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 EDAQ92838 391 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 ISL2Q96A47 359 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 MRPL4Q9BYD3 311 aaKnown RBP7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 POMKQ9H5K3 350 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 SFXN1Q9H9B4 322 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 POLD4Q9HCU8 107 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 KMT5AQ9NQR1 393 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 C19orf73Q9NVV2 129 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 SNTG2Q9NY99 539 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 KCND2Q9NZV8 630 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 ARHGAP28Q9P2N2 729 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 DPP7Q9UHL4 492 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 ADAM28Q9UKQ2 775 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 TNFSF13BQ9Y275 285 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 SF3B1O75533 1304 aaKnown RBP eCLIP7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 VPS37CA5D8V6 355 aaPredicted RBP7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 CASTOR2A6NHX0 329 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 F8W810 466 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 PTGESO14684 152 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 SLC16A4O15374 487 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 TEX28O15482 410 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 RNGTTO60942 597 aaKnown RBP7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 TADA2AO75478 443 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 GLUD1P00367 558 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 EDN1P05305 212 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 GLI1P08151 1106 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 PLA2G4BP0C869 781 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 PLS3P13797 630 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 SP100P23497 879 aaPredicted RBP7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 LONP1P36776 959 aaKnown RBP7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 UBA7P41226 1012 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 YARSP54577 528 aaKnown RBP7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 SLC12A3P55017 1021 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 STRN3Q13033 797 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 MAPK7Q13164 816 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 USP41Q3LFD5 358 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 ZNF568Q3ZCX4 644 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 TMEM119Q4V9L6 283 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 TMC5Q6UXY8 1006 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 PDZD3Q86UT5 571 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 GPR65Q8IYL9 337 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 C12orf76Q8N812 135 aaPredicted RBP7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 ASB11Q8WXH4 323 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 RABGGTAQ92696 567 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 CALML4Q96GE6 196 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 PLIN2Q99541 437 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 ACO2Q99798 780 aaKnown RBP7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 NTPCRQ9BSD7 190 aaKnown RBP7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 CCDC94Q9BW85 323 aaPredicted RBP7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 BACH2Q9BYV9 841 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 GPR62Q9BZJ7 368 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 RXFP1Q9HBX9 757 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 TOPORSQ9NS56 1045 aaPredicted RBP7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 CHST7Q9NS84 486 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 GDAQ9Y2T3 454 aa7.44□□□□□ -1.22
CCDC88A-213ENST00000476903 ZNF318Q5VUA4 2279 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 H0YCG3 227 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 C1RP00736 705 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 GSTP1P09211 210 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 WEE2P0C1S8 567 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 MCF2P10911 925 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 AFMP43652 599 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 ZXDAP98168 799 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 RAD51AP2Q09MP3 1159 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 ELAVL2Q12926 359 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 IKZF1Q13422 519 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 SF3A1Q15459 793 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 PTPN21Q16825 1174 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 PDXDC1Q6P996 788 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 MPZL3Q6UWV2 235 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 C15orf39Q6ZRI6 1047 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 GPR149Q86SP6 731 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 TDRD5Q8NAT2 981 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 CMASQ8NFW8 434 aaPredicted RBP7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 RASSF8Q8NHQ8 419 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 HASPINQ8TF76 798 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 RIN2Q8WYP3 895 aaPredicted RBP7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 INTS4Q96HW7 963 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 UROC1Q96N76 676 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 PAAF1Q9BRP4 392 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 TCHPQ9BT92 498 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 TTPALQ9BTX7 342 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 TARS2Q9BW92 718 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 CDT1Q9H211 546 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 PTPRHQ9HD43 1115 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 MAN1C1Q9NR34 630 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 FNIP2Q9P278 1114 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 LARSQ9P2J5 1176 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 CACNG4Q9UBN1 327 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 CDH22Q9UJ99 828 aa7.43□□□□□ -1.22
CCDC88A-213ENST00000476903 ODF2LQ9ULJ1 636 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms