RNA–Protein interactions for RNA: ENST00000475470.1

RPUSD3-215, Transcript of RNA pseudouridylate synthase domain containing 3, humanhuman

TSL 2

Gene RPUSD3, Length 2,413 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3-215ENST00000475470 NME7Q9Y5B8 376 aa16.17■□□□□ 0.18
RPUSD3-215ENST00000475470 TRPV2Q9Y5S1 764 aa16.17■□□□□ 0.18
RPUSD3-215ENST00000475470 PDCD11Q14690 1871 aaKnown RBP16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 hCG_1818297A0A087WSY0 165 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 SEPT4O43236 478 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 ATF2P15336 505 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 ADCY8P40145 1251 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 CDKN2BP42772 138 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 TAF6P49848 677 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 IFFO1Q0D2I5 559 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 SLMAPQ14BN4 828 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 KCNT1Q5JUK3 1230 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 GDF6Q6KF10 455 aaPredicted RBP16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 FAM183BPQ6ZVS7 135 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 ARRDC4Q8NCT1 418 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 UPF3AQ9H1J1 476 aaKnown RBP16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 GOLGA2P5Q9HBQ8 144 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 PCSK1NQ9UHG2 260 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 HMGB1P1B2RPK0 211 aaPredicted RBP16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 RPS6KA5O75582 802 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 ALDH1A1P00352 501 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 MYCNP04198 464 aaPredicted RBP16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 IL1R2P27930 398 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 GNL1P36915 607 aaPredicted RBP16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 PRKCZQ05513 592 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 SV2CQ496J9 727 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 DNAJC21Q5F1R6 531 aaKnown RBP16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 TTC30AQ86WT1 665 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 SNX25Q9H3E2 840 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 DPEP3Q9H4B8 488 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 GDAP2Q9NXN4 497 aa16.16■□□□□ 0.18
RPUSD3-215ENST00000475470 SPTLC1O15269 473 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 LIASO43766 372 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 PDGFRBP09619 1106 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 SETSIPP0DME0 302 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 GPD1P21695 349 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 VPS41P49754 854 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 ZNF143P52747 638 aaPredicted RBP16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 EIF3BP55884 814 aaKnown RBP16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 SNX16P57768 344 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 SOX4Q06945 474 aaPredicted RBP16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 TRIM32Q13049 653 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 BYSLQ13895 437 aaKnown RBP16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 PKDCCQ504Y2 493 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 DENND2CQ68D51 928 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 PMF1Q6P1K2 205 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 CCDC89Q8N998 374 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 APPL2Q8NEU8 664 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 DNAI2Q9GZS0 605 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 ST3GAL5Q9UNP4 418 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 TULP2O00295 520 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 CTSHP09668 335 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 PDGFRAP16234 1089 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 MIPP30301 263 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 ARHGAP17Q68EM7 881 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 CYP4F22Q6NT55 531 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 CCDC25Q86WR0 208 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 KBTBD7Q8WVZ9 684 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 RXFP2Q8WXD0 754 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 DNPEPQ9ULA0 475 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 USP18Q9UMW8 372 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 ZNF148Q9UQR1 794 aa16.15■□□□□ 0.18
RPUSD3-215ENST00000475470 TMEM88BA6NKF7 163 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 C3orf70A6NLC5 250 aaPredicted RBP16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 HCRTO43612 131 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 HUS1O60921 280 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 RARGP13631 454 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 KDELR1P24390 212 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 IVDP26440 423 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 CAV1Q03135 178 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 CACNB2Q08289 660 aaPredicted RBP16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 DRICH1Q6PGQ1 229 aaPredicted RBP16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 KCTD6Q8NC69 237 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 SLC35F5Q8WV83 523 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 HHIPL1Q96JK4 782 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 LPIN3Q9BQK8 851 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 CNPY3Q9BT09 278 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 TRAIPQ9BWF2 469 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 SLC4A5Q9BY07 1137 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 SEMA4AQ9H3S1 761 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 XPNPEP3Q9NQH7 507 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 BCCIPQ9P287 314 aaKnown RBP eCLIP16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 ANAPC5Q9UJX4 755 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 NEU2Q9Y3R4 380 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 SCN10AQ9Y5Y9 1956 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 C2CD4BA6NLJ0 364 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 GRAP2O75791 330 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 FGFR1P11362 822 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 PCK1P35558 622 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 ITGA8P53708 1063 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 PDE4CQ08493 712 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 LEKR1Q6ZMV7 388 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 CRYBG2Q8N1P7 616 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 BBOF1Q8ND07 529 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 HAUS1Q96CS2 278 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 PIWIL1Q96J94 861 aaKnown RBP16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 EPB41L4BQ9H329 900 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 EFR3BQ9Y2G0 817 aa16.14■□□□□ 0.17
RPUSD3-215ENST00000475470 TRUB2O95900 331 aaKnown RBP16.13■□□□□ 0.17
RPUSD3-215ENST00000475470 NUDT17P0C025 328 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms