RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 MYOZ2Q9NPC6 264 aa7.54□□□□□ -1.2
COL28A1-202ENST00000430711 CISHQ9NSE2 258 aa7.54□□□□□ -1.2
COL28A1-202ENST00000430711 GPATCH2LQ9NWQ4 482 aa7.54□□□□□ -1.2
COL28A1-202ENST00000430711 CYP39A1Q9NYL5 469 aa7.54□□□□□ -1.2
COL28A1-202ENST00000430711 KLHL14Q9P2G3 628 aa7.54□□□□□ -1.2
COL28A1-202ENST00000430711 SLC9A2Q9UBY0 812 aa7.54□□□□□ -1.2
COL28A1-202ENST00000430711 MCM3APO60318 1980 aa7.54□□□□□ -1.2
COL28A1-202ENST00000430711 BRCA1P38398 1863 aaKnown RBP7.54□□□□□ -1.2
COL28A1-202ENST00000430711 LOC100996750A0A140TA64 210 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 CYB561D2O14569 222 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 ABLIM1O14639 778 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 ALOX15BO15296 676 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 CST8O60676 142 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 GRAP2O75791 330 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 LINGO3P0C6S8 592 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 TPBGLP0DKB5 382 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 SFNP31947 248 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 ASPAP45381 313 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 LBX1P52954 281 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 ATN1P54259 1190 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 YARSP54577 528 aaKnown RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 CLUL1Q15846 466 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 BBS9Q3SYG4 887 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 EFHC2Q5JST6 749 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 EEF1DP3Q658K8 133 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 RINLQ6ZS11 566 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 ARHGEF18Q6ZSZ5 1173 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 NLRP9Q7RTR0 991 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 ALYREFQ86V81 257 aaKnown RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 VSIG1Q86XK7 387 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 FMNL3Q8IVF7 1028 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 UNC5BQ8IZJ1 945 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 NAT8LQ8N9F0 302 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 PPP1R13LQ8WUF5 828 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 CADM1Q9BY67 442 aaKnown RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 KRTAP4-6Q9BYQ5 205 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 C20orf27Q9GZN8 174 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 MINDY3Q9H8M7 445 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 PIDD1Q9HB75 910 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 SMYD2Q9NRG4 433 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 GINM1Q9NU53 330 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 WBP1LQ9NX94 342 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 CNTN6Q9UQ52 1028 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 STYXL1Q9Y6J8 313 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 EVPLQ92817 2033 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 A0A0G2JND7 137 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 CCDC195A0A1B0GUA6 201 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 MAGEB2O15479 319 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 PRPF4O43172 522 aaKnown RBP eCLIP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 HCRTO43612 131 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 DGAT1O75907 488 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 SMNDC1O75940 238 aaKnown RBP eCLIP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 KRT36O76013 467 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 NEBLO76041 1014 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 SORBS2O94875 1100 aaKnown RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 ARIH2O95376 493 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 ASS1P00966 412 aaKnown RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 PDHA1P08559 390 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 SUPT20HL2P0C7V6 817 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 TFE3P19532 575 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 CYP3A5P20815 502 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 BGNP21810 368 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 IL9RQ01113 521 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 ACVR2BQ13705 512 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 BMPR2Q13873 1038 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 C15orf59Q2T9L4 293 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 SUPT20HL1Q3ZLR7 823 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 WDR44Q5JSH3 913 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 NAIF1Q69YI7 327 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 ANO7Q6IWH7 933 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 DNAJC24Q6P3W2 148 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 CLNKQ7Z7G1 428 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 ZC3H18Q86VM9 953 aaKnown RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 MCF2L2Q86YR7 1114 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 KBTBD2Q8IY47 623 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 MAB21L3Q8N8X9 362 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 HSPH1Q92598 858 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 CLPTM1LQ96KA5 538 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 LRRC37BQ96QE4 947 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 CGRRF1Q99675 332 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 XYLT2Q9H1B5 865 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 PORCNQ9H237 461 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 SMYD3Q9H7B4 428 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 PARVAQ9NVD7 372 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 PIH1D1Q9NWS0 290 aaKnown RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 NOP53Q9NZM5 478 aaKnown RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 NXF1Q9UBU9 619 aaKnown RBP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.53□□□□□ -1.2
COL28A1-202ENST00000430711 STARD13Q9Y3M8 1113 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 WASF2Q9Y6W5 498 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 DOCK1Q14185 1865 aa7.53□□□□□ -1.2
COL28A1-202ENST00000430711 FAM237BA0A1B0GVD1 139 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 KBTBD13C9JR72 458 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 K7ERI5 159 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 ABHD2P08910 425 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 HOXC6P09630 235 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 SRGAP2CP0DJJ0 459 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 ATP2A2P16615 1042 aaKnown RBP7.52□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms