RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 SEPT2Q15019 361 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 MUM1L1Q5H9M0 696 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 IGFL4Q6B9Z1 124 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 ZSCAN25Q6NSZ9 544 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 BTNL9Q6UXG8 535 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 TICAM2Q86XR7 235 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 SLC35B2Q8TB61 432 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 ZNF384Q8TF68 577 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 MIEF2Q96C03 454 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 CAPNS2Q96L46 248 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 CPPED1Q9BRF8 314 aaPredicted RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 GPR87Q9BY21 358 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 DDX24Q9GZR7 859 aaKnown RBP eCLIP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 ENKD1Q9H0I2 346 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 PAG1Q9NWQ8 432 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 STAP2Q9UGK3 403 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 INTUQ9ULD6 942 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 SCAF8Q9UPN6 1271 aaKnown RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 GIT1Q9Y2X7 761 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 SPEF1Q9Y4P9 236 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 WDR33Q9C0J8 1336 aaKnown RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 MATN3O15232 486 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 FAM20BO75063 409 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 WDHD1O75717 1129 aaPredicted RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 CENPBP07199 599 aaPredicted RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 ZFYP08048 801 aaPredicted RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 GSPT1P15170 499 aaKnown RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 TNFRSF1AP19438 455 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 MX1P20591 662 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 ECHS1P30084 290 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 SLC5A3P53794 718 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 CACNB3P54284 484 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 EPHB1P54762 984 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 WNT3AP56704 352 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 IRX6P78412 446 aaPredicted RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 NUCB1Q02818 461 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 NOGQ13253 232 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 ZXDCQ2QGD7 858 aaPredicted RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 SLC9C2Q5TAH2 1124 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 RNF207Q6ZRF8 634 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 CHD1LQ86WJ1 897 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 FOXP4Q8IVH2 680 aaPredicted RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 TEX11Q8IYF3 940 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 MAGEB6Q8N7X4 407 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 CCHCR1Q8TD31 782 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 ST8SIA2Q92186 375 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 FAXDC2Q96IV6 333 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 PLEKHG4BQ96PX9 1271 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 TMEM39BQ9GZU3 492 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 DHX36Q9H2U1 1008 aaKnown RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 RBM12Q9NTZ6 932 aaKnown RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 ZBTB21Q9ULJ3 1066 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 RUVBL1Q9Y265 456 aaKnown RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 SIK3Q9Y2K2 1263 aa2.94□□□□□ -1.94
VPS13A-208ENST00000423463 RPAP1Q9BWH6 1393 aaPredicted RBP2.94□□□□□ -1.94
VPS13A-208ENST00000423463 NDUFS2O75306 463 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 C5AR1P21730 350 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 ADD2P35612 726 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 SLC6A9P48067 706 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 PDE1AP54750 535 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 PER3P56645 1201 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 MAP2K1Q02750 393 aaPredicted RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 TCP10Q12799 353 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 PRKG1Q13976 671 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 MOB2Q70IA6 237 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 PQLC1Q8N2U9 271 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 KBTBD3Q8NAB2 608 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 GPR156Q8NFN8 814 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 MDGA1Q8NFP4 955 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 FUBP3Q96I24 572 aaKnown RBP eCLIP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 TEKT5Q96M29 485 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 ADI1Q9BV57 179 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 ZNF341Q9BYN7 854 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 MSL2Q9HCI7 577 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 AATFQ9NY61 560 aaKnown RBP eCLIP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 SERPINB13Q9UIV8 391 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 ZNF112Q9UJU3 913 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 ARAP2Q8WZ64 1704 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 ZNF646O15015 1829 aaPredicted RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 SALL3Q9BXA9 1300 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 ZNF532Q9HCE3 1301 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 DDTLA6NHG4 134 aaPredicted RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 TRIM75PA6NK02 468 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 RNF113AO15541 343 aaKnown RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 IPO13O94829 963 aaKnown RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 ACRV1P26436 265 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 PCSK1P29120 753 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 ALDH1A3P47895 512 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 INHBEP58166 350 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 DYNLL1P63167 89 aaKnown RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 KIF23Q02241 960 aaPredicted RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 MRPL49Q13405 166 aaKnown RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 CSRP2Q16527 193 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 AFMIDQ63HM1 303 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 ADGRA1Q86SQ6 560 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 ZFPM1Q8IX07 1006 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 RHOT1Q8IXI2 618 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 GSPT2Q8IYD1 628 aaKnown RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 DDX55Q8NHQ9 600 aaKnown RBP eCLIP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 OTUD7AQ8TE49 926 aaPredicted RBP2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms