RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 TMEM259Q4ZIN3 620 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 SEZ6Q53EL9 994 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 CDCA2Q69YH5 1023 aaPredicted RBP5.95□□□□□ -1.46
RFFL-202ENST00000394597 IZUMO2Q6UXV1 221 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 ZPBP2Q6X784 338 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 TRIM67Q6ZTA4 783 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 CDR2LQ86X02 465 aaPredicted RBP5.95□□□□□ -1.46
RFFL-202ENST00000394597 SLC9A9Q8IVB4 645 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 KIAA2013Q8IYS2 634 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 ZNF564Q8TBZ8 553 aaPredicted RBP5.95□□□□□ -1.46
RFFL-202ENST00000394597 ABHD8Q96I13 439 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 POP1Q99575 1024 aaKnown RBP5.95□□□□□ -1.46
RFFL-202ENST00000394597 FDXACB1Q9BRP7 624 aaPredicted RBP5.95□□□□□ -1.46
RFFL-202ENST00000394597 PI4K2AQ9BTU6 479 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 HSD3B7Q9H2F3 369 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 SMYD3Q9H7B4 428 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 LRRC4Q9HBW1 653 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 SETD4Q9NVD3 440 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 PPARGC1AQ9UBK2 798 aaKnown RBP5.95□□□□□ -1.46
RFFL-202ENST00000394597 SOWAHBA6NEL2 793 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 ANKRD63C9JTQ0 380 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 SNX3O60493 162 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 MAFO75444 373 aaPredicted RBP5.95□□□□□ -1.46
RFFL-202ENST00000394597 GMNNO75496 209 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 FARP2O94887 1054 aaPredicted RBP5.95□□□□□ -1.46
RFFL-202ENST00000394597 VTNP04004 478 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 LINGO3P0C6S8 592 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 EPHB2P29323 1055 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 EPHB1P54762 984 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 NOP14P78316 857 aaKnown RBP5.95□□□□□ -1.46
RFFL-202ENST00000394597 PDE1BQ01064 536 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 KCNMA1Q12791 1236 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 DCTN2Q13561 401 aaKnown RBP5.95□□□□□ -1.46
RFFL-202ENST00000394597 DCAF4L1Q3SXM0 396 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 WASHC2DQ5SRD0 308 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 KAZNQ674X7 775 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 SV2AQ7L0J3 742 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 RNF180Q86T96 592 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 IRF2BP1Q8IU81 584 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 ATP11CQ8NB49 1132 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 TMEM161BQ8NDZ6 487 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 ZFAND2BQ8WV99 257 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 TRAPPC12Q8WVT3 735 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 MAML1Q92585 1016 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 ZNF560Q96MR9 790 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 CGRRF1Q99675 332 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 CLIC5Q9NZA1 410 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 AIPL1Q9NZN9 384 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 TRIM33Q9UPN9 1127 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 RPTORQ8N122 1335 aa5.95□□□□□ -1.46
RFFL-202ENST00000394597 ACKR2O00590 384 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 GLRA2P23416 452 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 MAN1A1P33908 653 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 ARFIP2P53365 341 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 LMNB2Q03252 620 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 MIIPQ5JXC2 388 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 LRRC74BQ6ZQY2 392 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 ZNF554Q86TJ5 538 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 ZNF677Q86XU0 584 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 TMCO5AQ8N6Q1 288 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 CCDC89Q8N998 374 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 RSAD2Q8WXG1 361 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 FAM149B1Q96BN6 582 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 LENG1Q96BZ8 264 aaPredicted RBP5.94□□□□□ -1.46
RFFL-202ENST00000394597 LRGUKQ96M69 825 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 TRAIPQ9BWF2 469 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 PABPC3Q9H361 631 aaKnown RBP5.94□□□□□ -1.46
RFFL-202ENST00000394597 UBN1Q9NPG3 1134 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 TUBA8Q9NY65 449 aaPredicted RBP5.94□□□□□ -1.46
RFFL-202ENST00000394597 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.94□□□□□ -1.468e-7■■□□□ 11.7
RFFL-202ENST00000394597 ZNF180Q9UJW8 692 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 SIK3Q9Y2K2 1263 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 UBR3Q6ZT12 1888 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 LY75O60449 1722 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 ASTN1O14525 1302 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 LAMB2P55268 1798 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 A0A087X0T9 212 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 ENTPD5O75356 428 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 CD4P01730 458 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 SHBGP04278 402 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 TMEM253P0C7T8 217 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 FAM228BP0C875 321 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 AKR1A1P14550 325 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 NCKAP1LP55160 1127 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 SLC34A1Q06495 639 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 SPIRE1Q08AE8 756 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 ASPHQ12797 758 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 DNAJC3Q13217 504 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 ZNF211Q13398 564 aaPredicted RBP5.94□□□□□ -1.46
RFFL-202ENST00000394597 KIZQ2M2Z5 673 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 SGO2Q562F6 1265 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 TLK2Q86UE8 772 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 SLC35G2Q8TBE7 412 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 SREK1Q8WXA9 508 aaKnown RBP5.94□□□□□ -1.46
RFFL-202ENST00000394597 L3MBTL3Q96JM7 780 aaPredicted RBP5.94□□□□□ -1.46
RFFL-202ENST00000394597 SPATA17Q96L03 361 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 EIF2AQ9BY44 585 aaKnown RBP5.94□□□□□ -1.46
RFFL-202ENST00000394597 NIF3L1Q9GZT8 377 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 TMEM117Q9H0C3 514 aa5.94□□□□□ -1.46
RFFL-202ENST00000394597 GDF3Q9NR23 364 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms