RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 GABRB2P47870 512 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 MTHFD1LQ6UB35 978 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 NPNTQ6UXI9 565 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 ANKMY2Q8IV38 441 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 MCRS1Q96EZ8 462 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 MYCBPQ99417 103 aaPredicted RBP14.06□□□□□ -0.16
CCDC3-202ENST00000378839 DDX56Q9NY93 547 aaKnown RBP14.06□□□□□ -0.16
CCDC3-202ENST00000378839 HCRTO43612 131 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 FOXN2P32314 431 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 SCTRP47872 440 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 NDST1P52848 882 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 PLCB3Q01970 1234 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 EFTUD2Q15029 972 aaKnown RBP eCLIP14.06□□□□□ -0.16
CCDC3-202ENST00000378839 C15orf59Q2T9L4 293 aaPredicted RBP14.06□□□□□ -0.16
CCDC3-202ENST00000378839 ZNF484Q5JVG2 852 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 CCDC121Q6ZUS5 278 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 FASTKD5Q7L8L6 764 aaKnown RBP14.06□□□□□ -0.16
CCDC3-202ENST00000378839 IFNLR1Q8IU57 520 aaPredicted RBP14.06□□□□□ -0.16
CCDC3-202ENST00000378839 BBOF1Q8ND07 529 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 CPT1BQ92523 772 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 MPHOSPH6Q99547 160 aaKnown RBP14.06□□□□□ -0.16
CCDC3-202ENST00000378839 STMN4Q9H169 189 aaPredicted RBP14.06□□□□□ -0.16
CCDC3-202ENST00000378839 CDHR5Q9HBB8 845 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 GRID1Q9ULK0 1009 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 STRIP2Q9ULQ0 834 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 PLXNA1Q9UIW2 1896 aa14.06□□□□□ -0.16
CCDC3-202ENST00000378839 CLUHO75153 1309 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 GRAP2O75791 330 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 GSCP56915 257 aaPredicted RBP14.05□□□□□ -0.16
CCDC3-202ENST00000378839 WDR4P57081 412 aaKnown RBP14.05□□□□□ -0.16
CCDC3-202ENST00000378839 TMED2Q15363 201 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 LACTB2Q53H82 288 aaPredicted RBP14.05□□□□□ -0.16
CCDC3-202ENST00000378839 LDLRAD1Q5T700 205 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 CCDC197Q8NCU1 140 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 HSPH1Q92598 858 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 HEXIM2Q96MH2 286 aaKnown RBP14.05□□□□□ -0.16
CCDC3-202ENST00000378839 ZMAT2Q96NC0 199 aaKnown RBP14.05□□□□□ -0.16
CCDC3-202ENST00000378839 VRTNQ9H8Y1 702 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 ABCF3Q9NUQ8 709 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 CEP83Q9Y592 693 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 TRUB2O95900 331 aaKnown RBP14.05□□□□□ -0.16
CCDC3-202ENST00000378839 RPL22P35268 128 aaKnown RBP14.05□□□□□ -0.16
CCDC3-202ENST00000378839 TMEM62Q0P6H9 643 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 LAMC2Q13753 1193 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 BBS12Q6ZW61 710 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 ZBED8Q8IZ13 594 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 PPTC7Q8NI37 304 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 FNIP1Q8TF40 1166 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 CKAP2Q8WWK9 683 aa14.05□□□□□ -0.16
CCDC3-202ENST00000378839 ASB14A6NK59 587 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 CCT8L1PA6NM43 557 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 ALOX15BO15296 676 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 SPAG7O75391 227 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 ABHD2P08910 425 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 LMNB2Q03252 620 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 MYO1EQ12965 1108 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 PKN2Q16513 984 aaKnown RBP14.04□□□□□ -0.16
CCDC3-202ENST00000378839 ARMC9Q7Z3E5 817 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 CMASQ8NFW8 434 aaPredicted RBP14.04□□□□□ -0.16
CCDC3-202ENST00000378839 LRRN4Q8WUT4 740 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 MRRFQ96E11 262 aaKnown RBP14.04□□□□□ -0.16
CCDC3-202ENST00000378839 PCDH9Q9HC56 1237 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 MED7O43513 233 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 SNX3O60493 162 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 CDH16O75309 829 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 RASSF9O75901 435 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 TMEM63AO94886 807 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 SMPD1P17405 629 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 EPHX2P34913 555 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 CTCFP49711 727 aaPredicted RBP14.04□□□□□ -0.16
CCDC3-202ENST00000378839 CDR1P51861 262 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 POU5F1BQ06416 359 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 ZNF268Q14587 947 aaPredicted RBP14.04□□□□□ -0.16
CCDC3-202ENST00000378839 STAT4Q14765 748 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 TMEM132DQ14C87 1099 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 MORF4L2Q15014 288 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 FAM183BPQ6ZVS7 135 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 NAT8LQ8N9F0 302 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 A0A1B0GUA9 196 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 A0A1W2PPM1 405 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 RBM47A0AV96 593 aaKnown RBP14.04□□□□□ -0.16
CCDC3-202ENST00000378839 E5RJQ4 531 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 PDIA2Q13087 525 aaKnown RBP14.04□□□□□ -0.16
CCDC3-202ENST00000378839 SYCP2LQ5T4T6 812 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 SHCBP1Q8NEM2 672 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 NLRP7Q8WX94 980 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 KHSRPQ92945 711 aaKnown RBP eCLIP14.04□□□□□ -0.16
CCDC3-202ENST00000378839 MS4A4AQ96JQ5 239 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 MRPL45Q9BRJ2 306 aaKnown RBP14.04□□□□□ -0.16
CCDC3-202ENST00000378839 MAGEB5Q9BZ81 275 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 SYNCQ9H7C4 482 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 UBN1Q9NPG3 1134 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.04□□□□□ -0.16
CCDC3-202ENST00000378839 DPP3Q9NY33 737 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.04□□□□□ -0.16
CCDC3-202ENST00000378839 USP18Q9UMW8 372 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 HES2Q9Y543 173 aa14.04□□□□□ -0.16
CCDC3-202ENST00000378839 PLXNB2O15031 1838 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 TRIP11Q15643 1979 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 SCN1AP35498 2009 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms