RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PTK7Q13308 1070 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 CAPSQ13938 189 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 NAIF1Q69YI7 327 aaPredicted RBP12.72□□□□□ -0.37
CLIP3-201ENST00000360535 CEP128Q6ZU80 1094 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 PPIL6Q8IXY8 311 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 UBA3Q8TBC4 463 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 TSSK1BQ9BXA7 367 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 PPP1R12CQ9BZL4 782 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 INO80BQ9C086 356 aaPredicted RBP12.72□□□□□ -0.37
CLIP3-201ENST00000360535 IQCGQ9H095 443 aaKnown RBP12.72□□□□□ -0.37
CLIP3-201ENST00000360535 PORCNQ9H237 461 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 LRMDAQ9H2I8 198 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 CNTNAP2Q9UHC6 1331 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 H0YCG3 227 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 LDHAP00338 332 aaKnown RBP12.71□□□□□ -0.37
CLIP3-201ENST00000360535 INHBAP08476 426 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 DPEP1P16444 411 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 CALB2P22676 271 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 RASSF2P50749 326 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 ARFIP2P53365 341 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 TGFB2P61812 414 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 PIGHQ14442 188 aaPredicted RBP12.71□□□□□ -0.37
CLIP3-201ENST00000360535 KBTBD12Q3ZCT8 623 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 DSTYKQ6XUX3 929 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 TRAPPC12Q8WVT3 735 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 TRIM56Q9BRZ2 755 aaKnown RBP12.71□□□□□ -0.37
CLIP3-201ENST00000360535 ZNF395Q9H8N7 513 aaPredicted RBP12.71□□□□□ -0.37
CLIP3-201ENST00000360535 PICK1Q9NRD5 415 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 GPATCH2LQ9NWQ4 482 aa12.71□□□□□ -0.37
CLIP3-201ENST00000360535 GYG2O15488 501 aa12.71□□□□□ -0.38
CLIP3-201ENST00000360535 LRCH4O75427 683 aa12.71□□□□□ -0.38
CLIP3-201ENST00000360535 HAUS5O94927 633 aa12.71□□□□□ -0.38
CLIP3-201ENST00000360535 ABL2P42684 1182 aa12.71□□□□□ -0.38
CLIP3-201ENST00000360535 HADHQ16836 314 aaKnown RBP12.71□□□□□ -0.38
CLIP3-201ENST00000360535 KHDC1Q4VXA5 237 aaKnown RBP12.71□□□□□ -0.38
CLIP3-201ENST00000360535 CLNKQ7Z7G1 428 aa12.71□□□□□ -0.38
CLIP3-201ENST00000360535 STK32AQ8WU08 396 aa12.71□□□□□ -0.38
CLIP3-201ENST00000360535 TRIM55Q9BYV6 548 aa12.71□□□□□ -0.38
CLIP3-201ENST00000360535 CYP39A1Q9NYL5 469 aa12.71□□□□□ -0.38
CLIP3-201ENST00000360535 PTDSS1P48651 473 aaKnown RBP12.7□□□□□ -0.38
CLIP3-201ENST00000360535 BMPR2Q13873 1038 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 SERAC1Q96JX3 654 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 NIF3L1Q9GZT8 377 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 CYTH4Q9UIA0 394 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 SHOC2Q9UQ13 582 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 MYO18AQ92614 2054 aaKnown RBP12.7□□□□□ -0.38
CLIP3-201ENST00000360535 FAM237BA0A1B0GVD1 139 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 KBTBD13C9JR72 458 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 ASS1P00966 412 aaKnown RBP12.7□□□□□ -0.38
CLIP3-201ENST00000360535 TPBGLP0DKB5 382 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 NAMPTP43490 491 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 CDH6P55285 790 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 SLC8A3P57103 927 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 DUOXA2Q1HG44 320 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 NBPF20Q3BBV1 942 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 CIAPIN1Q6FI81 312 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 ARFGAP1Q8N6T3 406 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.7□□□□□ -0.38
CLIP3-201ENST00000360535 JDP2Q8WYK2 163 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 FAF2Q96CS3 445 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 CPXM1Q96SM3 734 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 WDR83Q9BRX9 315 aaKnown RBP12.7□□□□□ -0.38
CLIP3-201ENST00000360535 TMEM120AQ9BXJ8 343 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 SENP1Q9P0U3 644 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 MCF2LO15068 1137 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 KIF1CO43896 1103 aaKnown RBP12.7□□□□□ -0.38
CLIP3-201ENST00000360535 ATP5HO75947 161 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 ITGBL1O95965 494 aaPredicted RBP12.7□□□□□ -0.38
CLIP3-201ENST00000360535 ITGAVP06756 1048 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 KDELR1P24390 212 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 CCNHP51946 323 aaPredicted RBP12.7□□□□□ -0.38
CLIP3-201ENST00000360535 BACE1P56817 501 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 TMEM192Q8IY95 271 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 RTKN2Q8IZC4 609 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 RDM1Q8NG50 284 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 FAXDC2Q96IV6 333 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 MIPEPQ99797 713 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 FOXP3Q9BZS1 431 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 SLC24A2Q9UI40 661 aa12.7□□□□□ -0.38
CLIP3-201ENST00000360535 DRG1Q9Y295 367 aaKnown RBP12.7□□□□□ -0.38
CLIP3-201ENST00000360535 B4GALT5O43286 388 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 KRT36O76013 467 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 RNF8O76064 485 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 ZWINTO95229 277 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 ESRRAP11474 423 aaPredicted RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 IGBP1P78318 339 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 MCL1Q07820 350 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 KPNB1Q14974 876 aaKnown RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 RCN1Q15293 331 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 C15orf59Q2T9L4 293 aaPredicted RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 EFHC2Q5JST6 749 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 FAM102AQ5T9C2 384 aaPredicted RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 RELL1Q8IUW5 271 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 ASCC2Q9H1I8 757 aaPredicted RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 RAB6BQ9NRW1 208 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 DDX56Q9NY93 547 aaKnown RBP12.69□□□□□ -0.38
CLIP3-201ENST00000360535 HMGXB4Q9UGU5 601 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 MAD1L1Q9Y6D9 718 aa12.69□□□□□ -0.38
CLIP3-201ENST00000360535 MYL2P10916 166 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms